Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002222`

染色体: Chr06 坐标: 31245665-31247499 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002222`
名称	SmilChr06G002222
描述	uncharacterized SmilChr06G002222
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	31245665 - 31247499 / `-`

ID 对照

NCBI Gene ID	`LOC130990759`
GeneID	`130990759`
locus_tag	`-`
NCBI Name	`LOC130990759`
原始查询	`SmilChr06G002222`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816006]; symbol=AT2G15180; hit=AT2G15180; species=arabidopsis; confidence=weak
产物	Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816006]; symbol=AT2G15180; hit=AT2G15180; species=arabidopsis; confidence=weak
Arabidopsis	`AT2G15180` (AT2G15180) Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816006] identity=37.1; qcov=0.13; evalue=4.68e-08; confidence=weak
Rice	`Os02g0566300` - identity=25.2; qcov=0.662; evalue=1.28e-06; confidence=low
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF30863 (PRO_PEG10-RTL1); PF30901 (PEG10-RTL1_C-capsid)
InterPro	-
eggNOG	-
NR	GeneID:130990759

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057770972.1`
2	Cytoplasm	细胞质	0.80000	`XP_057770972.1`
3	Nucleoplasm	核质	0.20000	`XP_057770972.1`
4	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057770972.1`
5	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057770972.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:31245912`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B110,C24,C59
`Chr6:31246016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr6:31246062`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B65,C49
`Chr6:31246191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr6:31246383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B43,C50
`Chr6:31246387`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:31246420`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr6:31246440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr6:31246464`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr6:31246510`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B102
`Chr6:31246510`	`TG`	`T`	1bp_deletion	CDS_variant	1	B102
`Chr6:31246533`	`CA`	`C`	1bp_deletion	frameshift_variant	9	B10,B107,B124,B25,B79,C39,C53,C75,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770972.1

539 aa

270

539

PEG10_N-capsid

PEG10-RTL1_C-capsid

zf-CCHC

PRO_PEG10-RTL1

PF03732 PEG10_N-capsid 84-166 aa PF30901 PEG10-RTL1_C-capsid 176-249 aa PF00098 zf-CCHC 314-331 aa PF30863 PRO_PEG10-RTL1 406-483 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770972.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	84	166	6.9e-19	68.7	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057770972.1`	Pfam	`PF30901`	PEG10-RTL1_C-capsid	Domain	176	249	2.3e-07	31.4	PEG10/RTL1, C-terminal capsid-like domain
`XP_057770972.1`	Pfam	`PF00098`	zf-CCHC	Domain	314	331	9.8e-06	26.1	Zinc knuckle
`XP_057770972.1`	Pfam	`PF30863`	PRO_PEG10-RTL1	Domain	406	483	9.6e-08	33.2	PEG10/RTL1 protease domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914989.1
ATGGAAAACACAAATCCTATTGAATTTACATTGCAAGCCATGCAACAACAATTTGCAAGGTTTGGAGTTGTTATGGAAAATGTAACAGAACGATTGGAGAGGCTGGAATTTCAAGCACCACCGAGGAATGAGGAGGAAGGAGAGAGCGAAGGAGAAGATGATCGTACATCAACACATCGAAATGAAAGGCGAGGAGGAGGTAGAAGAAGAAGACATCAAAATGAAGTTGATGGTGACTTGGGAAGCATCAAATTGAAGAT...

CDS

1 records

下载 CDS FASTA

LOC130990759
ATGGAAAACACAAATCCTATTGAATTTACATTGCAAGCCATGCAACAACAATTTGCAAGGTTTGGAGTTGTTATGGAAAATGTAACAGAACGATTGGAGAGGCTGGAATTTCAAGCACCACCGAGGAATGAGGAGGAAGGAGAGAGCGAAGGAGAAGATGATCGTACATCAACACATCGAAATGAAAGGCGAGGAGGAGGTAGAAGAAGAAGACATCAAAATGAAGTTGATGGTGACTTGGGAAGCATCAAATTGAAGAT...

Protein

1 records

下载 Protein FASTA

XP_057770972.1
MENTNPIEFTLQAMQQQFARFGVVMENVTERLERLEFQAPPRNEEEGESEGEDDRTSTHRNERRGGGRRRRHQNEVDGDLGSIKLKIPTFQGRSDPEAYLEWERKVELIFECHNYSGEKKVRLAAIEFTDYAIVWWDQLTTNRRRYRERPISTWEEMKSIMRKRFVPSHYFRELYQKLQSMNQGTKSVDEYYKEMEIAMIRANVDEDREATMARFLCGLNKEIANIVDLQHYVELEDMVHMAMKVEKQLKKKGTFQRNFP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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