当前解析结果
SmilChr06G002224| 统一新 Gene ID | SmilChr06G002224 |
|---|---|
| 名称 | SmilChr06G002224 |
| 描述 | uncharacterized SmilChr06G002224 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 31374908 - 31377054 / + |
| NCBI Gene ID | LOC130990760 |
|---|---|
| GeneID | 130990760 |
| locus_tag | - |
| NCBI Name | LOC130990760 |
| 原始查询 | SmilChr06G002224 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=low |
| 产物 | hit=Os12g0142900; species=rice; confidence=low |
| Arabidopsis | AT2G15180 (AT2G15180)Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816006] identity=37.1; qcov=0.114; evalue=1.75e-08; confidence=weak |
| Rice | Os12g0142900- identity=25.1; qcov=0.475; evalue=1.28e-09; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF30863 (PRO_PEG10-RTL1); PF30901 (PEG10-RTL1_C-capsid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990760 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770974.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057770974.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057770974.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057770974.1 |
| 5 | Nucleoplasm | 核质 | 0.20000 | XP_057770974.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:31374916 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B130,B2,C78 |
Chr6:31374924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,C58 |
Chr6:31374967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B112,B57,B59,B89 |
Chr6:31374998 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B107,B112,B57,B59,B89 |
Chr6:31374998 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B112,B57,B59,B89 |
Chr6:31375009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B117,B47,C27,D4 |
Chr6:31375033 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr6:31375046 |
G |
GCA |
2bp_insertion | frameshift_variant | 1 | C86 |
Chr6:31375046 |
G |
GCA |
2bp_insertion | CDS_variant | 1 | C86 |
Chr6:31375059 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B38,B39,B56,B96 |
Chr6:31375097 |
C |
T |
EMS_canonical_SNV | stop_gained | 20 | A6,B104,B128,B137,B16,B18,B41,B50,B60,B70,B8,B81,B85,C15,C31,C49,C50,C55,C57,C61 |
Chr6:31375238 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B117,B33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770974.1PF03732
PEG10_N-capsid 84-166 aa
PF30901
PEG10-RTL1_C-capsid 176-249 aa
PF00098
zf-CCHC 314-331 aa
PF30863
PRO_PEG10-RTL1 406-483 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770974.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 84 | 166 | 1.3e-19 | 71.0 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057770974.1 |
Pfam | PF30901 |
PEG10-RTL1_C-capsid | Domain | 176 | 249 | 2e-07 | 31.6 | PEG10/RTL1, C-terminal capsid-like domain |
XP_057770974.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 314 | 331 | 1.2e-05 | 25.9 | Zinc knuckle |
XP_057770974.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 406 | 483 | 1.1e-07 | 33.0 | PEG10/RTL1 protease domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。