Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002230

染色体: Chr06 坐标: 31517777-31519948 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002230
名称SmilChr06G002230
描述uncharacterized SmilChr06G002230
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向31517777 - 31519948 / +

ID 对照

NCBI Gene IDLOC130990763
GeneID130990763
locus_tag-
NCBI NameLOC130990763
原始查询SmilChr06G002230

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829708]; symbol=DAW1; hit=AT4G35560; species=arabidopsis; confidence=medium
产物Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829708]; symbol=DAW1; hit=AT4G35560; species=arabidopsis; confidence=medium
ArabidopsisAT4G35560 (DAW1)
Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829708]
identity=39.8; qcov=0.968; evalue=7.42e-37; confidence=medium
RiceOs04g0564700
-
identity=36.6; qcov=0.951; evalue=4e-29; confidence=medium
GOGO:0005096 (GTPase activator activity); GO:0005737 (cytoplasm); GO:0005886 (plasma membrane); GO:0017157 (regulation of exocytosis); GO:0019905 (syntaxin binding); GO:0045159 (myosin II binding)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130990763

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057770978.1
2 Chromosome 染色体 0.40000 XP_057770978.1
3 Nucleus membrane 核膜 0.20000 XP_057770978.1
4 Spindle pole body Spindle pole body 0.20000 XP_057770978.1
5 Centromere 着丝粒 0.00000 XP_057770978.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:31518831 C T EMS_canonical_SNV CDS_variant 4 B103,B21,B44,B75
Chr6:31518850 C T EMS_canonical_SNV CDS_variant 1 B104
Chr6:31518863 G A EMS_canonical_SNV CDS_variant 1 B107
Chr6:31519067 G A EMS_canonical_SNV CDS_variant 4 B113,B45,C34,C63
Chr6:31519087 G A EMS_canonical_SNV CDS_variant 1 B65
Chr6:31519102 C T EMS_canonical_SNV CDS_variant 4 B10,B128,D4,D8
Chr6:31519221 C T EMS_canonical_SNV CDS_variant 2 B10,D8
Chr6:31519347 G A EMS_canonical_SNV CDS_variant 2 A14,B109
Chr6:31519407 C T EMS_canonical_SNV CDS_variant 2 B35,C34
Chr6:31519416 G A EMS_canonical_SNV CDS_variant 1 C25
Chr6:31519556 G A EMS_canonical_SNV CDS_variant 2 B109,B65
Chr6:31519562 C CG 1bp_insertion frameshift_variant 1 C22

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057914995.1
CCTCTGCGGCGGTCGAGCCGCTGCTGTCCTGTTATTTATTTATTTTTGATAATTTTGGAATTTTAGCTGCAATTTGTCTATTTCGTTCGAACCACACACTTGAAGAGGTTTTCTCTTTTTTGGGGGTTTTTGTTATTCTCATCTTTTTTGATTTGCTGTCATTTAGAAAGGCTTTTGATCCTGAATAGATAAGGTGTGTTTATTTTGCTGTTGGAGTTGAAATAATTGGGAAATATTTAAGCTTAAATAGAGAGGGTGTA...

CDS

1 records

下载 CDS FASTA
LOC130990763
ATGTACAAAAAGAAATTCAGTTCCCCTTGTTACTCGGCATCAACGTTTGGCTCTCCAGATGTCGGACTTATACTTGTTTTTGCCAGTGGAAAAATCGAGATTAGATCCCTGCCAGAATTGTCTCTAGTGAAAGAAAGTTCAATAAGAGTGCTCACATTTTCGACTTCTAGACCTTTCTCCGTTTCTGACATTGTAGTGTCGTCATCCCTTGATGGCGAACTCATCATTGTTAACGGCAATCAGGAGTTAGTTTTCGTCTC...

Protein

1 records

下载 Protein FASTA
XP_057770978.1
MYKKKFSSPCYSASTFGSPDVGLILVFASGKIEIRSLPELSLVKESSIRVLTFSTSRPFSVSDIVVSSSLDGELIIVNGNQELVFVSTLLHEAYRFVDSVSMVLKKNLVNAQGLIYTPPVKEKKKGIFASVIKDNKSSKSRNGHEVETEDCRQSIEELCTIFSTSNFAREIESEEKKIMNEELDIDDIEIEEPKERARVMAGLNRQNITNTFQAIKGKCDPVKISGSYKSSTSQRIYVLLFLLQELV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器