当前解析结果
SmilChr06G002242| 统一新 Gene ID | SmilChr06G002242 |
|---|---|
| 名称 | SmilChr06G002242 |
| 描述 | pentatricopeptide repeat-containing protein At5g27270-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 31794154 - 31795100 / - |
| NCBI Gene ID | LOC130990766 |
|---|---|
| GeneID | 130990766 |
| locus_tag | - |
| NCBI Name | LOC130990766 |
| 原始查询 | SmilChr06G002242 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At5g27270-like |
| 产物 | pentatricopeptide repeat-containing protein At5g27270-like |
| Arabidopsis | AT5G27270 (EMB976)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832785] identity=48.8; qcov=0.86; evalue=2.26e-30; confidence=medium |
| Rice | Os05g0275000- identity=29.8; qcov=0.807; evalue=1.08e-15; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990766 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057770981.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057770981.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770981.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770981.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770981.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:31794159 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C39,C66,C82 |
Chr6:31794290 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,B52 |
Chr6:31794382 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,D10 |
Chr6:31794412 |
T |
TA |
1bp_insertion | frameshift_variant | 8 | B118,B122,B140,B17,B37,B52,B71,C20 |
Chr6:31794427 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B95 |
Chr6:31794427 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B95 |
Chr6:31795046 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B32,C17,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770981.1PF13812
PPR_3 10-56 aa
PF13041
PPR_2 12-57 aa
PF01535
PPR 14-42 aa
PF17177
PPR_long 23-130 aa
PF13041
PPR_2 44-92 aa
PF01535
PPR 50-77 aa
PF13812
PPR_3 69-126 aa
PF01535
PPR 83-112 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770981.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 10 | 56 | 1.5e-16 | 60.9 | Pentatricopeptide repeat domain |
XP_057770981.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 12 | 57 | 7e-26 | 90.8 | PPR repeat family |
XP_057770981.1 |
Pfam | PF01535 |
PPR | Repeat | 14 | 42 | 1.1e-20 | 73.0 | PPR repeat |
XP_057770981.1 |
Pfam | PF17177 |
PPR_long | Repeat | 23 | 130 | 1.2e-08 | 35.3 | Pentacotripeptide-repeat region of PRORP |
XP_057770981.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 44 | 92 | 7e-26 | 90.8 | PPR repeat family |
XP_057770981.1 |
Pfam | PF01535 |
PPR | Repeat | 50 | 77 | 1.1e-20 | 73.0 | PPR repeat |
XP_057770981.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 69 | 126 | 1.5e-16 | 60.9 | Pentatricopeptide repeat domain |
XP_057770981.1 |
Pfam | PF01535 |
PPR | Repeat | 83 | 112 | 1.1e-20 | 73.0 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。