Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002252`

染色体: Chr06 坐标: 31955765-31966199 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002252`
名称	SmilChr06G002252
描述	protein TONSOKU
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	31955765 - 31966199 / `-`

ID 对照

NCBI Gene ID	`LOC130989097`
GeneID	`130989097`
locus_tag	`-`
NCBI Name	`LOC130989097`
原始查询	`SmilChr06G002252`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein TONSOKU
产物	protein TONSOKU
Arabidopsis	`AT3G18730` (TSK) tetratricopeptide repeat (TPR)-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821404] identity=46.8; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0782800` - identity=48.6; qcov=1.04; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0009933 (meristem structural organization); GO:0040029 (epigenetic regulation of gene expression); GO:0072423 (response to DNA damage checkpoint signaling)
KEGG	-
Pfam	PF07719 (TPR_2); PF13176 (TPR_7); PF13181 (TPR_8); PF13374 (TPR_10); PF13424 (TPR_12); PF13432 (TPR_16)
InterPro	-
eggNOG	-
NR	GeneID:130989097

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769039.1`
2	Chromosome	染色体	0.60000	`XP_057769039.1`
3	Nuclear body	核内小体	0.40000	`XP_057769042.1`
4	Nucleoplasm	核质	0.20000	`XP_057769039.1`
5	Cytosol	细胞质基质	0.20000	`XP_057769039.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:31956071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr6:31956136`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,A16,B131
`Chr6:31956517`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B18
`Chr6:31956517`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B18
`Chr6:31957696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr6:31957733`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,D1
`Chr6:31957754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr6:31958431`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:31959187`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B31,C28
`Chr6:31959238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B107,B31,C28
`Chr6:31959249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B31,C28,C72
`Chr6:31959447`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769039.1

1339 aa

670

1339

TPR_7

TPR_8

TPR_10

TPR_12

TPR_7

TPR_2

TPR_8

TPR_16

TPR_7

PF13176 TPR_7 75-108 aa PF13181 TPR_8 171-199 aa PF13374 TPR_10 171-201 aa PF13424 TPR_12 213-284 aa PF13176 TPR_7 216-244 aa PF07719 TPR_2 253-282 aa PF13181 TPR_8 253-282 aa PF13432 TPR_16 256-282 aa PF13176 TPR_7 260-288 aa

XP_057769041.1

1338 aa

669

1338

TPR_7

TPR_8

TPR_10

TPR_12

TPR_7

TPR_2

TPR_8

TPR_16

TPR_7

XP_057769042.1

1298 aa

649

1298

TPR_7

TPR_8

TPR_10

TPR_12

TPR_7

TPR_2

TPR_8

TPR_16

TPR_7

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769039.1`	Pfam	`PF13176`	TPR_7	Repeat	75	108	3.3e-16	58.6	Tetratricopeptide repeat
`XP_057769039.1`	Pfam	`PF13181`	TPR_8	Repeat	171	199	2.6e-15	55.9	Tetratricopeptide repeat
`XP_057769039.1`	Pfam	`PF13374`	TPR_10	Repeat	171	201	7.1e-18	64.7	Tetratricopeptide repeat
`XP_057769039.1`	Pfam	`PF13424`	TPR_12	Repeat	213	284	3.6e-26	91.9	Tetratricopeptide repeat
`XP_057769039.1`	Pfam	`PF13176`	TPR_7	Repeat	216	244	3.3e-16	58.6	Tetratricopeptide repeat
`XP_057769039.1`	Pfam	`PF07719`	TPR_2	Repeat	253	282	1.1e-19	69.6	Tetratricopeptide repeat
`XP_057769039.1`	Pfam	`PF13181`	TPR_8	Repeat	253	282	2.6e-15	55.9	Tetratricopeptide repeat
`XP_057769039.1`	Pfam	`PF13432`	TPR_16	Repeat	256	282	1e-09	39.4	Tetratricopeptide repeat
`XP_057769039.1`	Pfam	`PF13176`	TPR_7	Repeat	260	288	3.3e-16	58.6	Tetratricopeptide repeat
`XP_057769041.1`	Pfam	`PF13176`	TPR_7	Repeat	75	108	3.3e-16	58.6	Tetratricopeptide repeat
`XP_057769041.1`	Pfam	`PF13181`	TPR_8	Repeat	171	199	2.5e-15	55.9	Tetratricopeptide repeat
`XP_057769041.1`	Pfam	`PF13374`	TPR_10	Repeat	171	201	7e-18	64.7	Tetratricopeptide repeat
`XP_057769041.1`	Pfam	`PF13424`	TPR_12	Repeat	213	284	3.5e-26	91.9	Tetratricopeptide repeat
`XP_057769041.1`	Pfam	`PF13176`	TPR_7	Repeat	216	244	3.3e-16	58.6	Tetratricopeptide repeat
`XP_057769041.1`	Pfam	`PF07719`	TPR_2	Repeat	253	282	1.1e-19	69.6	Tetratricopeptide repeat
`XP_057769041.1`	Pfam	`PF13181`	TPR_8	Repeat	253	282	2.5e-15	55.9	Tetratricopeptide repeat
`XP_057769041.1`	Pfam	`PF13432`	TPR_16	Repeat	256	282	1e-09	39.4	Tetratricopeptide repeat
`XP_057769041.1`	Pfam	`PF13176`	TPR_7	Repeat	260	288	3.3e-16	58.6	Tetratricopeptide repeat
`XP_057769042.1`	Pfam	`PF13176`	TPR_7	Repeat	75	108	3.1e-16	58.7	Tetratricopeptide repeat
`XP_057769042.1`	Pfam	`PF13181`	TPR_8	Repeat	171	199	1.9e-15	56.3	Tetratricopeptide repeat
`XP_057769042.1`	Pfam	`PF13374`	TPR_10	Repeat	171	201	5.5e-18	65.0	Tetratricopeptide repeat
`XP_057769042.1`	Pfam	`PF13424`	TPR_12	Repeat	213	284	2.9e-26	92.2	Tetratricopeptide repeat
`XP_057769042.1`	Pfam	`PF13176`	TPR_7	Repeat	216	244	3.1e-16	58.7	Tetratricopeptide repeat
`XP_057769042.1`	Pfam	`PF07719`	TPR_2	Repeat	253	282	8e-20	70.0	Tetratricopeptide repeat
`XP_057769042.1`	Pfam	`PF13181`	TPR_8	Repeat	253	282	1.9e-15	56.3	Tetratricopeptide repeat
`XP_057769042.1`	Pfam	`PF13432`	TPR_16	Repeat	256	282	8.4e-10	39.6	Tetratricopeptide repeat
`XP_057769042.1`	Pfam	`PF13176`	TPR_7	Repeat	260	288	3.1e-16	58.7	Tetratricopeptide repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057913059.1
CGGTATTTTGGATTTGGGAAAACCCTTTATAATCGAGCCCACCCCATTTTCCTTTACTAATTTTGCTTTTGAAGGGAAGACCCTTAAAAAAAGAAAAAGGAGTTGGCGGGAAAATTTAATCTGATGATAGCTATTGAACAACACCAACGCTCCGCCCCTCTTTGGCTCTAGAACAAGACCTGCGTAGTGAATCGGCAATAATCAGAAGATAAGACATTCATAGTAAATCTGAGGCGTCGCCGTGCAAGAAATGCGTCGGA...

XM_057913058.1
CGGTATTTTGGATTTGGGAAAACCCTTTATAATCGAGCCCACCCCATTTTCCTTTACTAATTTTGCTTTTGAAGGGAAGACCCTTAAAAAAAGAAAAAGGAGTTGGCGGGAAAATTTAATCTGATGATAGCTATTGAACAACACCAACGCTCCGCCCCTCTTTGGCTCTAGAACAAGACCTGCGTAGTGAATCGGCAATAATCAGAAGATAAGACATTCATAGTAAATCTGAGGCGTCGCCGTGCAAGAAATGCGTCGGA...

CDS

3 records

下载 CDS FASTA

LOC130989097
ATGCGTCGGAAAGAGGAGTCGAGCCAGCAGCAGCAGCTGATCGCGGCGAAGAGGGCCTACAAGGCGGCGGCGGCGGAAGGGAACCGGCAGGAGGAAGCGCGTTGGGCGAACTTCATCGGCGACTTACTCAAGAATCGTGGCGAGTACGTGGAGGCCCTCAAGTGGCTGCGCAAGGACTACGATGTCTCCCTAAGGCACCTGCCCGATAAGCAGCTGCTTGCCACGTGTCAGTCCCTCGGTGAGCTCCACCTCCGTCTCCA...

Protein

3 records

下载 Protein FASTA

XP_057769039.1
MRRKEESSQQQQLIAAKRAYKAAAAEGNRQEEARWANFIGDLLKNRGEYVEALKWLRKDYDVSLRHLPDKQLLATCQSLGELHLRLQNYEDALKYQKKHLDLAKDENDLIEQQRASTQLGRTYHEMFLKSDDDHSSIRNAKKYFELSMELARTIKEKPPSEEVSFVKEYIDAYNNLGMLEIDLDNLNAAEKNLREGLEICHEEEVPEGDATRSRLHHNLGNVYMELRKWDKAYEHIKKDINICKLIGHCQGEAKGYINYG...

XP_057769041.1
MRRKEESSQQQQLIAAKRAYKAAAAEGNRQEEARWANFIGDLLKNRGEYVEALKWLRKDYDVSLRHLPDKQLLATCQSLGELHLRLQNYEDALKYQKKHLDLAKDENDLIEQQRASTQLGRTYHEMFLKSDDDHSSIRNAKKYFELSMELARTIKEKPPSEEVSFVKEYIDAYNNLGMLEIDLDNLNAAEKNLREGLEICHEEEVPEGDATRSRLHHNLGNVYMELRKWDKAYEHIKKDINICKLIGHCQGEAKGYINYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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