Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002350`

染色体: Chr06 坐标: 34198111-34204289 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002350`
名称	SmilChr06G002350
描述	probable glucan 1,3-alpha-glucosidase
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	34198111 - 34204289 / `-`

ID 对照

NCBI Gene ID	`LOC130989171`
GeneID	`130989171`
locus_tag	`-`
NCBI Name	`LOC130989171`
原始查询	`SmilChr06G002350`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable glucan 1,3-alpha-glucosidase
产物	probable glucan 1%2C3-alpha-glucosidase
Arabidopsis	`AT5G63840` (RSW3) Glycosyl hydrolases family 31 protein [Source:NCBI gene (formerly Entrezgene);Acc:836504] identity=71.2; qcov=1; evalue=0; confidence=high
Rice	`Os03g0216600` - identity=70.9; qcov=0.905; evalue=0; confidence=high
GO	GO:0005975 (carbohydrate metabolic process); GO:0006491 (N-glycan processing); GO:0030246 (carbohydrate binding); GO:0090599 (alpha-glucosidase activity)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF01055 (Glyco_hydro_31_2nd); PF13802 (Gal_mutarotas_2); PF21365 (Glyco_hydro_31_3rd)
InterPro	-
eggNOG	-
NR	GeneID:130989171

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum lumen	内质网腔	1.00000	`XP_057769093.1`
2	Endoplasmic reticulum	内质网	0.80000	`XP_057769093.1`
3	Nucleus	细胞核	0.00000	`XP_057769093.1`
4	Chromosome	染色体	0.00000	`XP_057769093.1`
5	Centromere	着丝粒	0.00000	`XP_057769093.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:34198316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,C2,C68
`Chr6:34198339`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr6:34198350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:34199458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr6:34199462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:34200154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:34200425`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr6:34200468`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:34200484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr6:34200579`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:34203305`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:34203595`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769093.1

922 aa

461

922

Gal_mutarotas_2

Glyco_hydro_31_2nd

Glyco_hydro_31_3rd

PF13802 Gal_mutarotas_2 83-298 aa PF01055 Glyco_hydro_31_2nd 356-684 aa PF21365 Glyco_hydro_31_3rd 692-779 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769093.1`	Pfam	`PF13802`	Gal_mutarotas_2	Domain	83	298	1.3e-41	143.6	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain
`XP_057769093.1`	Pfam	`PF01055`	Glyco_hydro_31_2nd	Domain	356	684	5.3e-120	401.3	Glycosyl hydrolases family 31 TIM-barrel domain
`XP_057769093.1`	Pfam	`PF21365`	Glyco_hydro_31_3rd	Domain	692	779	2.2e-26	92.8	Glycosyl hydrolase family 31 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057913110.1
TCACCACTCTAATTCTTCACTTCCAAAATCTCCACACAAAAAACTCTTTGACTGTTTGCCATTCTTCCGATTCCATGCGATTTCTCCACGGGAGTTGTTTGATCTGCACAACACATTAGAAGAAGAAGCCATGGGAAGGCATCTTTCCACCTTTTTGCTGCTTCTCCTCTTCACCAATTCAGTTTTTTCCTGGAAAAAGGACGAGTTCAGAAACTGCAATCAGACCCCATTCTGCAAGCGCGCCCGCTCCCGGAAACCGG...

CDS

1 records

下载 CDS FASTA

LOC130989171
ATGGGAAGGCATCTTTCCACCTTTTTGCTGCTTCTCCTCTTCACCAATTCAGTTTTTTCCTGGAAAAAGGACGAGTTCAGAAACTGCAATCAGACCCCATTCTGCAAGCGCGCCCGCTCCCGGAAACCGGGCTCCTGCTCCTTGATCGCGTCCGATGTCTCGATCTCTGACGGCGATCTAGTCGCCAAACTCATCGCCAAGCAGCCTAGTCAAGAGGATTCCGAGAGGCCCGCAAAACCCTTGGTTCTCACAATATCGGC...

Protein

1 records

下载 Protein FASTA

XP_057769093.1
MGRHLSTFLLLLLFTNSVFSWKKDEFRNCNQTPFCKRARSRKPGSCSLIASDVSISDGDLVAKLIAKQPSQEDSERPAKPLVLTISAYQDGVLRMKIDEDQSLAPRKRFEVPDVIEPEFLKKKLWLQRLKEEKSENGVISVIYLSEGYEAVIRHEPFEIFVRESGENGKKVLSLNSNGLFDFEQLREKEDGEDWEERFRSHTDKRPYGSQSISFDVSFYEADFVYGIPEHATSLALNPTRGPGVEFSEPYRLFNLDVFEY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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