当前解析结果
SmilChr06G002354| 统一新 Gene ID | SmilChr06G002354 |
|---|---|
| 名称 | SmilChr06G002354 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 34262745 - 34265742 / - |
| NCBI Gene ID | LOC130989174 |
|---|---|
| GeneID | 130989174 |
| locus_tag | - |
| NCBI Name | LOC130989174 |
| 原始查询 | SmilChr06G002354 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 |
| Arabidopsis | AT5G35370 (AT5G35370)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833498] identity=49; qcov=1.01; evalue=0; confidence=high |
| Rice | Os02g0767400- identity=45.4; qcov=1.04; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989174 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769095.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057769095.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769095.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769095.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769095.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:34262971 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:34263099 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr6:34263186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr6:34263252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr6:34263310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,C18 |
Chr6:34263336 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr6:34263441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr6:34263510 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr6:34263716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:34263828 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:34263851 |
T |
TAA |
2bp_insertion | frameshift_variant | 2 | A18,B47 |
Chr6:34263851 |
T |
TAA |
2bp_insertion | CDS_variant | 2 | A18,B47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769095.1PF01453
B_lectin 80-164 aa
PF07714
PK_Tyr_Ser-Thr 515-797 aa
PF00069
Pkinase 516-796 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769095.1 |
Pfam | PF01453 |
B_lectin | Repeat | 80 | 164 | 1.1e-15 | 58.7 | D-mannose binding lectin |
XP_057769095.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 515 | 797 | 1.5e-48 | 166.1 | Protein tyrosine and serine/threonine kinase |
XP_057769095.1 |
Pfam | PF00069 |
Pkinase | Domain | 516 | 796 | 8.5e-49 | 167.0 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。