当前解析结果
SmilChr06G002373| 统一新 Gene ID | SmilChr06G002373 |
|---|---|
| 名称 | SmilChr06G002373 |
| 描述 | uncharacterized SmilChr06G002373 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 34569996 - 34570900 / - |
| NCBI Gene ID | LOC130990801 |
|---|---|
| GeneID | 130990801 |
| locus_tag | - |
| NCBI Name | LOC130990801 |
| 原始查询 | SmilChr06G002373 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os02g0328500; species=rice; confidence=low |
| 产物 | hit=Os02g0328500; species=rice; confidence=low |
| Arabidopsis | AT5G27260 (AT5G27260)Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784] identity=24.6; qcov=0.815; evalue=1.69e-06; confidence=weak |
| Rice | Os02g0328500- identity=31.6; qcov=0.463; evalue=9.33e-13; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990801 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771018.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057771018.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057771018.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057771018.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057771018.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:34570000 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr6:34570017 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | C65 |
Chr6:34570017 |
CT |
C |
1bp_deletion | CDS_variant | 1 | C65 |
Chr6:34570060 |
G |
GT |
1bp_insertion | frameshift_variant | 101 | A1,A11,A14,A19,A20,A21,A24,A9,B101,B102,B104,B106,B108,B113,B115,B117,B119,B120,B124,B129,B130,B132,B135,B139,B14,B15,B2,B20,B24,B25,B28,B32,B34,B35,B36,B46,B47,B48,B49,B51,B53,B56,B59,B60,B61,B63,B64,B65,B66,B70,B72,B79,B8,B82,B83,B89,B9,B91,B93,B94,B96,B97,C12,C13,C15,C16,C18,C19,C22,C26,C27,C29,C3,C31,C32,C33,C4,C42,C43,C47,C49,C5,C50,C52,C56,C58,C59,C60,C61,C62,C64,C65,C68,C7,C70,C77,C85,C87,D10,D5,D7 |
Chr6:34570082 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,B66,B83 |
Chr6:34570085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr6:34570120 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B57,B62,C61 |
Chr6:34570126 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,B95 |
Chr6:34570127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B95,C14 |
Chr6:34570138 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B95 |
Chr6:34570138 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B95 |
Chr6:34570141 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B95 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。