Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002375

染色体: Chr06 坐标: 34607159-34610881 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002375
名称SmilChr06G002375
描述pentatricopeptide repeat-containing protein At2g17140
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向34607159 - 34610881 / +

ID 对照

NCBI Gene IDLOC130989194
GeneID130989194
locus_tag-
NCBI NameLOC130989194
原始查询SmilChr06G002375

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g17140
产物pentatricopeptide repeat-containing protein At2g17140
ArabidopsisAT2G17140 (AT2G17140)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816219]
identity=53; qcov=0.998; evalue=0; confidence=high
RiceOs02g0132100
-
identity=48.1; qcov=0.817; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130989194

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057769115.1
2 Chloroplast 叶绿体 0.20000 XP_057769115.1
3 Nucleus 细胞核 0.00000 XP_057769115.1
4 Chromosome 染色体 0.00000 XP_057769115.1
5 Centromere 着丝粒 0.00000 XP_057769115.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:34607518 C T EMS_canonical_SNV CDS_variant 1 D10
Chr6:34607555 C T EMS_canonical_SNV CDS_variant 1 B62
Chr6:34607572 C T EMS_canonical_SNV CDS_variant 1 A14
Chr6:34607740 C T EMS_canonical_SNV CDS_variant 1 B122
Chr6:34608172 G A EMS_canonical_SNV CDS_variant 2 A18,B62
Chr6:34608332 G A EMS_canonical_SNV CDS_variant 1 A14
Chr6:34608463 C T EMS_canonical_SNV CDS_variant 1 C59
Chr6:34608559 G A EMS_canonical_SNV CDS_variant 2 A18,B62
Chr6:34608744 G A EMS_canonical_SNV CDS_variant 1 B13
Chr6:34609265 C T EMS_canonical_SNV CDS_variant 1 A14
Chr6:34609474 G A EMS_canonical_SNV CDS_variant 1 A14
Chr6:34609660 G A EMS_canonical_SNV CDS_variant 1 A14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769115.1
905 aa
N
1
452
905
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_3
PPR_2
PPR
TPR_24
PPR_1
PPR
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_long
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR
C
PF12854 PPR_1 146-172 aa PF13041 PPR_2 146-193 aa PF01535 PPR 147-177 aa PF12854 PPR_1 175-208 aa PF01535 PPR 182-209 aa PF13812 PPR_3 205-260 aa PF12854 PPR_1 212-243 aa PF13041 PPR_2 214-263 aa PF01535 PPR 217-247 aa PF12854 PPR_1 245-278 aa PF01535 PPR 252-280 aa PF13041 PPR_2 287-335 aa PF01535 PPR 290-318 aa PF13041 PPR_2 323-371 aa PF01535 PPR 326-355 aa PF17177 PPR_long 338-456 aa PF13812 PPR_3 346-401 aa PF12854 PPR_1 353-385 aa PF01535 PPR 360-389 aa PF13041 PPR_2 361-406 aa PF12854 PPR_1 389-420 aa PF13812 PPR_3 389-437 aa PF13041 PPR_2 392-439 aa PF01535 PPR 396-425 aa PF23276 TPR_24 397-486 aa PF12854 PPR_1 424-455 aa PF01535 PPR 430-459 aa PF12854 PPR_1 463-490 aa PF01535 PPR 465-494 aa PF12854 PPR_1 515-546 aa PF13041 PPR_2 518-567 aa PF01535 PPR 521-550 aa PF13812 PPR_3 544-597 aa PF13041 PPR_2 553-600 aa PF01535 PPR 558-586 aa PF17177 PPR_long 566-681 aa PF01535 PPR 592-621 aa PF13041 PPR_2 592-636 aa PF13812 PPR_3 613-634 aa PF12854 PPR_1 619-651 aa PF01535 PPR 626-656 aa PF13041 PPR_2 627-672 aa PF13812 PPR_3 647-684 aa PF01535 PPR 730-760 aa
XP_057769116.1
868 aa
N
1
434
868
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_3
PPR_2
PPR
TPR_24
PPR_1
PPR
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_long
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR
C
PF12854 PPR_1 146-172 aa PF13041 PPR_2 146-193 aa PF01535 PPR 147-177 aa PF12854 PPR_1 175-208 aa PF01535 PPR 182-209 aa PF13812 PPR_3 205-260 aa PF12854 PPR_1 212-243 aa PF13041 PPR_2 214-263 aa PF01535 PPR 217-247 aa PF12854 PPR_1 245-278 aa PF01535 PPR 252-280 aa PF13041 PPR_2 287-335 aa PF01535 PPR 290-318 aa PF13041 PPR_2 323-371 aa PF01535 PPR 326-355 aa PF17177 PPR_long 338-456 aa PF13812 PPR_3 346-401 aa PF12854 PPR_1 353-385 aa PF01535 PPR 360-389 aa PF13041 PPR_2 360-406 aa PF12854 PPR_1 389-420 aa PF13812 PPR_3 389-437 aa PF13041 PPR_2 392-439 aa PF01535 PPR 396-425 aa PF23276 TPR_24 397-486 aa PF12854 PPR_1 424-455 aa PF01535 PPR 430-459 aa PF12854 PPR_1 463-490 aa PF01535 PPR 465-494 aa PF12854 PPR_1 515-546 aa PF13041 PPR_2 518-567 aa PF01535 PPR 521-550 aa PF13812 PPR_3 544-597 aa PF13041 PPR_2 553-600 aa PF01535 PPR 558-586 aa PF17177 PPR_long 566-681 aa PF01535 PPR 592-621 aa PF13041 PPR_2 592-636 aa PF13812 PPR_3 613-634 aa PF12854 PPR_1 619-651 aa PF01535 PPR 626-656 aa PF13041 PPR_2 627-672 aa PF13812 PPR_3 647-684 aa PF01535 PPR 730-760 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769115.1 Pfam PF12854 PPR_1 Repeat 146 172 2.2e-136 443.9 PPR repeat
XP_057769115.1 Pfam PF13041 PPR_2 Repeat 146 193 4.4e-133 434.0 PPR repeat family
XP_057769115.1 Pfam PF01535 PPR Repeat 147 177 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF12854 PPR_1 Repeat 175 208 2.2e-136 443.9 PPR repeat
XP_057769115.1 Pfam PF01535 PPR Repeat 182 209 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF13812 PPR_3 Repeat 205 260 9e-65 215.4 Pentatricopeptide repeat domain
XP_057769115.1 Pfam PF12854 PPR_1 Repeat 212 243 2.2e-136 443.9 PPR repeat
XP_057769115.1 Pfam PF13041 PPR_2 Repeat 214 263 4.4e-133 434.0 PPR repeat family
XP_057769115.1 Pfam PF01535 PPR Repeat 217 247 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF12854 PPR_1 Repeat 245 278 2.2e-136 443.9 PPR repeat
XP_057769115.1 Pfam PF01535 PPR Repeat 252 280 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF13041 PPR_2 Repeat 287 335 4.4e-133 434.0 PPR repeat family
XP_057769115.1 Pfam PF01535 PPR Repeat 290 318 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF13041 PPR_2 Repeat 323 371 4.4e-133 434.0 PPR repeat family
XP_057769115.1 Pfam PF01535 PPR Repeat 326 355 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF17177 PPR_long Repeat 338 456 6.7e-33 114.6 Pentacotripeptide-repeat region of PRORP
XP_057769115.1 Pfam PF13812 PPR_3 Repeat 346 401 9e-65 215.4 Pentatricopeptide repeat domain
XP_057769115.1 Pfam PF12854 PPR_1 Repeat 353 385 2.2e-136 443.9 PPR repeat
XP_057769115.1 Pfam PF01535 PPR Repeat 360 389 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF13041 PPR_2 Repeat 361 406 4.4e-133 434.0 PPR repeat family
XP_057769115.1 Pfam PF12854 PPR_1 Repeat 389 420 2.2e-136 443.9 PPR repeat
XP_057769115.1 Pfam PF13812 PPR_3 Repeat 389 437 9e-65 215.4 Pentatricopeptide repeat domain
XP_057769115.1 Pfam PF13041 PPR_2 Repeat 392 439 4.4e-133 434.0 PPR repeat family
XP_057769115.1 Pfam PF01535 PPR Repeat 396 425 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF23276 TPR_24 Repeat 397 486 1.3e-30 106.7 Pentatricopeptide repeat-containing protein
XP_057769115.1 Pfam PF12854 PPR_1 Repeat 424 455 2.2e-136 443.9 PPR repeat
XP_057769115.1 Pfam PF01535 PPR Repeat 430 459 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF12854 PPR_1 Repeat 463 490 2.2e-136 443.9 PPR repeat
XP_057769115.1 Pfam PF01535 PPR Repeat 465 494 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF12854 PPR_1 Repeat 515 546 2.2e-136 443.9 PPR repeat
XP_057769115.1 Pfam PF13041 PPR_2 Repeat 518 567 4.4e-133 434.0 PPR repeat family
XP_057769115.1 Pfam PF01535 PPR Repeat 521 550 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF13812 PPR_3 Repeat 544 597 9e-65 215.4 Pentatricopeptide repeat domain
XP_057769115.1 Pfam PF13041 PPR_2 Repeat 553 600 4.4e-133 434.0 PPR repeat family
XP_057769115.1 Pfam PF01535 PPR Repeat 558 586 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF17177 PPR_long Repeat 566 681 6.7e-33 114.6 Pentacotripeptide-repeat region of PRORP
XP_057769115.1 Pfam PF01535 PPR Repeat 592 621 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF13041 PPR_2 Repeat 592 636 4.4e-133 434.0 PPR repeat family
XP_057769115.1 Pfam PF13812 PPR_3 Repeat 613 634 9e-65 215.4 Pentatricopeptide repeat domain
XP_057769115.1 Pfam PF12854 PPR_1 Repeat 619 651 2.2e-136 443.9 PPR repeat
XP_057769115.1 Pfam PF01535 PPR Repeat 626 656 3.3e-108 347.4 PPR repeat
XP_057769115.1 Pfam PF13041 PPR_2 Repeat 627 672 4.4e-133 434.0 PPR repeat family
XP_057769115.1 Pfam PF13812 PPR_3 Repeat 647 684 9e-65 215.4 Pentatricopeptide repeat domain
XP_057769115.1 Pfam PF01535 PPR Repeat 730 760 3.3e-108 347.4 PPR repeat
XP_057769116.1 Pfam PF12854 PPR_1 Repeat 146 172 8.9e-137 445.2 PPR repeat
XP_057769116.1 Pfam PF13041 PPR_2 Repeat 146 193 1.6e-133 435.5 PPR repeat family
XP_057769116.1 Pfam PF01535 PPR Repeat 147 177 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF12854 PPR_1 Repeat 175 208 8.9e-137 445.2 PPR repeat
XP_057769116.1 Pfam PF01535 PPR Repeat 182 209 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF13812 PPR_3 Repeat 205 260 4.6e-65 216.3 Pentatricopeptide repeat domain
XP_057769116.1 Pfam PF12854 PPR_1 Repeat 212 243 8.9e-137 445.2 PPR repeat
XP_057769116.1 Pfam PF13041 PPR_2 Repeat 214 263 1.6e-133 435.5 PPR repeat family
XP_057769116.1 Pfam PF01535 PPR Repeat 217 247 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF12854 PPR_1 Repeat 245 278 8.9e-137 445.2 PPR repeat
XP_057769116.1 Pfam PF01535 PPR Repeat 252 280 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF13041 PPR_2 Repeat 287 335 1.6e-133 435.5 PPR repeat family
XP_057769116.1 Pfam PF01535 PPR Repeat 290 318 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF13041 PPR_2 Repeat 323 371 1.6e-133 435.5 PPR repeat family
XP_057769116.1 Pfam PF01535 PPR Repeat 326 355 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF17177 PPR_long Repeat 338 456 4.8e-33 115.0 Pentacotripeptide-repeat region of PRORP
XP_057769116.1 Pfam PF13812 PPR_3 Repeat 346 401 4.6e-65 216.3 Pentatricopeptide repeat domain
XP_057769116.1 Pfam PF12854 PPR_1 Repeat 353 385 8.9e-137 445.2 PPR repeat
XP_057769116.1 Pfam PF01535 PPR Repeat 360 389 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF13041 PPR_2 Repeat 360 406 1.6e-133 435.5 PPR repeat family
XP_057769116.1 Pfam PF12854 PPR_1 Repeat 389 420 8.9e-137 445.2 PPR repeat
XP_057769116.1 Pfam PF13812 PPR_3 Repeat 389 437 4.6e-65 216.3 Pentatricopeptide repeat domain
XP_057769116.1 Pfam PF13041 PPR_2 Repeat 392 439 1.6e-133 435.5 PPR repeat family
XP_057769116.1 Pfam PF01535 PPR Repeat 396 425 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF23276 TPR_24 Repeat 397 486 8.3e-31 107.4 Pentatricopeptide repeat-containing protein
XP_057769116.1 Pfam PF12854 PPR_1 Repeat 424 455 8.9e-137 445.2 PPR repeat
XP_057769116.1 Pfam PF01535 PPR Repeat 430 459 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF12854 PPR_1 Repeat 463 490 8.9e-137 445.2 PPR repeat
XP_057769116.1 Pfam PF01535 PPR Repeat 465 494 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF12854 PPR_1 Repeat 515 546 8.9e-137 445.2 PPR repeat
XP_057769116.1 Pfam PF13041 PPR_2 Repeat 518 567 1.6e-133 435.5 PPR repeat family
XP_057769116.1 Pfam PF01535 PPR Repeat 521 550 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF13812 PPR_3 Repeat 544 597 4.6e-65 216.3 Pentatricopeptide repeat domain
XP_057769116.1 Pfam PF13041 PPR_2 Repeat 553 600 1.6e-133 435.5 PPR repeat family
XP_057769116.1 Pfam PF01535 PPR Repeat 558 586 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF17177 PPR_long Repeat 566 681 4.8e-33 115.0 Pentacotripeptide-repeat region of PRORP
XP_057769116.1 Pfam PF01535 PPR Repeat 592 621 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF13041 PPR_2 Repeat 592 636 1.6e-133 435.5 PPR repeat family
XP_057769116.1 Pfam PF13812 PPR_3 Repeat 613 634 4.6e-65 216.3 Pentatricopeptide repeat domain
XP_057769116.1 Pfam PF12854 PPR_1 Repeat 619 651 8.9e-137 445.2 PPR repeat
XP_057769116.1 Pfam PF01535 PPR Repeat 626 656 1.3e-108 348.6 PPR repeat
XP_057769116.1 Pfam PF13041 PPR_2 Repeat 627 672 1.6e-133 435.5 PPR repeat family
XP_057769116.1 Pfam PF13812 PPR_3 Repeat 647 684 4.6e-65 216.3 Pentatricopeptide repeat domain
XP_057769116.1 Pfam PF01535 PPR Repeat 730 760 1.3e-108 348.6 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057913132.1
TTAGAAAGGCCTTAAACCGAAAAAACAATAAGAAAAATGAAACTAGAGATTGAACCGTCGCGGTGAGATATGGGCGTCGGAACTTCAACAGCGACGATTGCCGGCGAGAGAAAGAGAGATGAGAAATTATGAAATTGGATTATTGCAGTGGCTAAATAAAAATAGTGTGAGTGCACTGCAGGCGGCACTTGAGCGAGTCGAGCAATGGAACAAGCGAAAATGGTGGCCAAAGCTGTGCTCCGAAACTCCGACAATCCGCA...
XM_057913133.1
TTAGAAAGGCCTTAAACCGAAAAAACAATAAGAAAAATGAAACTAGAGATTGAACCGTCGCGGTGAGATATGGGCGTCGGAACTTCAACAGCGACGATTGCCGGCGAGAGAAAGAGAGATGAGAAATTATGAAATTGGATTATTGCAGTGGCTAAATAAAAATAGTGTGAGTGCACTGCAGGCGGCACTTGAGCGAGTCGAGCAATGGAACAAGCGAAAATGGTGGCCAAAGCTGTGCTCCGAAACTCCGACAATCCGCA...

CDS

2 records

下载 CDS FASTA
LOC130989194
ATGGAACAAGCGAAAATGGTGGCCAAAGCTGTGCTCCGAAACTCCGACAATCCGCAGCTGGCATGGCTTCTCTTCAAGCGCACCCTCGCCAGCAATATTAAAGATTGCTCCTTTTCCCAGCACACACTCTCTCTCATCGTCCCCATTCTCATCCGCGCCCACATGTTCTCTCAAGTCGACTATCTCCACCGCCATCTCCTCCTCTTCCCCACGCCGCCGCATCATGCTTTGTATTCCTTCGTCAAGATGTTGGCCGAGGC...
LOC130989194
ATGGAACAAGCGAAAATGGTGGCCAAAGCTGTGCTCCGAAACTCCGACAATCCGCAGCTGGCATGGCTTCTCTTCAAGCGCACCCTCGCCAGCAATATTAAAGATTGCTCCTTTTCCCAGCACACACTCTCTCTCATCGTCCCCATTCTCATCCGCGCCCACATGTTCTCTCAAGTCGACTATCTCCACCGCCATCTCCTCCTCTTCCCCACGCCGCCGCATCATGCTTTGTATTCCTTCGTCAAGATGTTGGCCGAGGC...

Protein

2 records

下载 Protein FASTA
XP_057769115.1
MEQAKMVAKAVLRNSDNPQLAWLLFKRTLASNIKDCSFSQHTLSLIVPILIRAHMFSQVDYLHRHLLLFPTPPHHALYSFVKMLAEAGRVQQAFSQFQSLRARLARAPPSILLYNLLIRASIKQNCPNYVSWLYKDIIFSKVKLQTYTFNLLIGTLCDAGRLEDARHLFDRMPDRDCQPNEYTFGILARGYCRDGLVDKGLELLDLMKTMALVPTAVIYNTFISGFCKEGKDDEAERLVERMKEDGLSPNVVTFNTRISA...
XP_057769116.1
MEQAKMVAKAVLRNSDNPQLAWLLFKRTLASNIKDCSFSQHTLSLIVPILIRAHMFSQVDYLHRHLLLFPTPPHHALYSFVKMLAEAGRVQQAFSQFQSLRARLARAPPSILLYNLLIRASIKQNCPNYVSWLYKDIIFSKVKLQTYTFNLLIGTLCDAGRLEDARHLFDRMPDRDCQPNEYTFGILARGYCRDGLVDKGLELLDLMKTMALVPTAVIYNTFISGFCKEGKDDEAERLVERMKEDGLSPNVVTFNTRISA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器