Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002380`

染色体: Chr06 坐标: 34635670-34638192 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002380`
名称	SmilChr06G002380
描述	U-box domain-containing protein 15-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	34635670 - 34638192 / `+`

ID 对照

NCBI Gene ID	`LOC130989196`
GeneID	`130989196`
locus_tag	`-`
NCBI Name	`LOC130989196`
原始查询	`SmilChr06G002380`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	U-box domain-containing protein 15-like
产物	U-box domain-containing protein 15-like
Arabidopsis	`AT5G42340` (PUB15) Plant U-Box 15 [Source:NCBI gene (formerly Entrezgene);Acc:834240] identity=58.1; qcov=0.976; evalue=0; confidence=high
Rice	`Os08g0481200` (OsPUB14) - identity=54.6; qcov=0.976; evalue=0; confidence=high
GO	GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0007166 (cell surface receptor signaling pathway); GO:0016567 (protein ubiquitination)
KEGG	-
Pfam	PF00514 (Arm); PF04564 (U-box); PF25368 (PUB10_N); PF25598 (ARM_PUB)
InterPro	-
eggNOG	-
NR	GeneID:130989196

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057769121.1`
2	Cytosol	细胞质基质	0.80000	`XP_057769122.1`
3	Nucleus	细胞核	0.00000	`XP_057769121.1`
4	Chromosome	染色体	0.00000	`XP_057769121.1`
5	Centromere	着丝粒	0.00000	`XP_057769121.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:34635960`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B92
`Chr6:34636175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr6:34636357`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C18,C43,C49
`Chr6:34636360`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,C77,C81,C86
`Chr6:34636374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,C77,C81,C86
`Chr6:34636375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr6:34636378`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,B98
`Chr6:34636621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr6:34636668`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr6:34636713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,A16,B131,B64
`Chr6:34636762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr6:34637260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,B66,B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769121.1

654 aa

327

654

PUB10_N

U-box

ARM_PUB

Arm

PF25368 PUB10_N 35-146 aa PF04564 U-box 250-275 aa PF04564 U-box 298-346 aa PF25598 ARM_PUB 368-645 aa PF00514 Arm 398-437 aa PF00514 Arm 440-478 aa PF00514 Arm 482-518 aa

XP_057769122.1

629 aa

314

629

PUB10_N

U-box

ARM_PUB

Arm

PF25368 PUB10_N 35-146 aa PF04564 U-box 250-321 aa PF25598 ARM_PUB 343-620 aa PF00514 Arm 373-412 aa PF00514 Arm 415-453 aa PF00514 Arm 457-493 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769121.1`	Pfam	`PF25368`	PUB10_N	Domain	35	146	9.8e-41	140.0	PUB10-like, N-terminal domain
`XP_057769121.1`	Pfam	`PF04564`	U-box	Domain	250	275	7.8e-18	65.1	U-box domain
`XP_057769121.1`	Pfam	`PF04564`	U-box	Domain	298	346	7.8e-18	65.1	U-box domain
`XP_057769121.1`	Pfam	`PF25598`	ARM_PUB	Repeat	368	645	8.6e-21	75.4	Plant U-box protein ARM repeat region
`XP_057769121.1`	Pfam	`PF00514`	Arm	Repeat	398	437	1.6e-26	92.1	Armadillo/beta-catenin-like repeat
`XP_057769121.1`	Pfam	`PF00514`	Arm	Repeat	440	478	1.6e-26	92.1	Armadillo/beta-catenin-like repeat
`XP_057769121.1`	Pfam	`PF00514`	Arm	Repeat	482	518	1.6e-26	92.1	Armadillo/beta-catenin-like repeat
`XP_057769122.1`	Pfam	`PF25368`	PUB10_N	Domain	35	146	1.1e-40	139.8	PUB10-like, N-terminal domain
`XP_057769122.1`	Pfam	`PF04564`	U-box	Domain	250	321	8.8e-23	81.0	U-box domain
`XP_057769122.1`	Pfam	`PF25598`	ARM_PUB	Repeat	343	620	7.9e-21	75.5	Plant U-box protein ARM repeat region
`XP_057769122.1`	Pfam	`PF00514`	Arm	Repeat	373	412	1.2e-26	92.5	Armadillo/beta-catenin-like repeat
`XP_057769122.1`	Pfam	`PF00514`	Arm	Repeat	415	453	1.2e-26	92.5	Armadillo/beta-catenin-like repeat
`XP_057769122.1`	Pfam	`PF00514`	Arm	Repeat	457	493	1.2e-26	92.5	Armadillo/beta-catenin-like repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913138.1
TTTTTTTCACCTGCGGAATAGGGAAAATAAATAAATAAATGAATAACCTGAAATTCCACCCTTAAATTCCGCAATCACGTAAAGCAAATAAAAATAATAAAGAAACAAAGAAAAATCTTGGAGCACTCCCCTGCACTAGTAAAGTGCTCAATCATGGCTTTTTTGCATTGGAAATTCTGCTAGCAAGTGGTTGGTGCTAGCTAGATATTCCTGCATTCTTTCTTAGAGAGAGAGAGAGAGAGTCTATGGAGTCCATGGAG...

XM_057913139.1
TTTTTTTCACCTGCGGAATAGGGAAAATAAATAAATAAATGAATAACCTGAAATTCCACCCTTAAATTCCGCAATCACGTAAAGCAAATAAAAATAATAAAGAAACAAAGAAAAATCTTGGAGCACTCCCCTGCACTAGTAAAGTGCTCAATCATGGCTTTTTTGCATTGGAAATTCTGCTAGCAAGTGGTTGGTGCTAGCTAGATATTCCTGCATTCTTTCTTAGAGAGAGAGAGAGAGAGTCTATGGAGTCCATGGAG...

CDS

2 records

下载 CDS FASTA

LOC130989196
ATGGAGTCCATGGAGGGGGAAGGAAATGGGGTTGAGGTAGTGGGAGAAATGGTGGAGACGATAGAGAAAGTGGGGAAGTATACTGATTTCAGAAGAACGCAGAGGAAAGAGTGTATGAACTTGGTGAGAAGGCTGAAGCTGCTGACGCCGCTGCTCGAAGAGATTAGGGAGCTTCATACCTCTGTTTCAGCAGACGCATTAAATCACTTGGTTGATTTGAACAAGGCCTTGTTGGCTTCAAAGAAGCTGCTCAAGACCTG...

Protein

2 records

下载 Protein FASTA

XP_057769121.1
MESMEGEGNGVEVVGEMVETIEKVGKYTDFRRTQRKECMNLVRRLKLLTPLLEEIRELHTSVSADALNHLVDLNKALLASKKLLKTCNSGSKIFLALESDAVMSRFHQVYDKINQALNGVPYEKLGISEEVKEQVELMHMQLKRAKRRTETQDMELAMDMMVVFTRNDERNADDAIIEKLAKKLELHTAAELKAESVAVRKLVKAKGKNATQQVVDLLAKFKQISGVDENSVLDEPALVRCLEKSKSLLIPHEFLCPISL...

XP_057769122.1
MESMEGEGNGVEVVGEMVETIEKVGKYTDFRRTQRKECMNLVRRLKLLTPLLEEIRELHTSVSADALNHLVDLNKALLASKKLLKTCNSGSKIFLALESDAVMSRFHQVYDKINQALNGVPYEKLGISEEVKEQVELMHMQLKRAKRRTETQDMELAMDMMVVFTRNDERNADDAIIEKLAKKLELHTAAELKAESVAVRKLVKAKGKNATQQVVDLLAKFKQISGVDENSVLDEPALVRCLEKSKSLLIPHEFLCPISL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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