当前解析结果
SmilChr06G002385| 统一新 Gene ID | SmilChr06G002385 |
|---|---|
| 名称 | SmilChr06G002385 |
| 描述 | protein DETOXIFICATION 45, chloroplastic |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 34659935 - 34665057 / - |
| NCBI Gene ID | LOC130989203 |
|---|---|
| GeneID | 130989203 |
| locus_tag | - |
| NCBI Name | LOC130989203 |
| 原始查询 | SmilChr06G002385 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein DETOXIFICATION 45, chloroplastic |
| 产物 | protein DETOXIFICATION 45%2C chloroplastic |
| Arabidopsis | AT4G38380 (AT4G38380)MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:829995] identity=62.7; qcov=0.891; evalue=0; confidence=high |
| Rice | Os09g0548300- identity=59.5; qcov=0.82; evalue=0; confidence=high |
| GO | GO:0009507 (chloroplast); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF01554 (MatE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989203 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057769133.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057769133.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057769133.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769133.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769133.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:34660641 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr6:34660832 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr6:34661196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr6:34661517 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B24,B40,B74,B93,C53 |
Chr6:34661522 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,C26,D3 |
Chr6:34661524 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B24,B40,B93,C53 |
Chr6:34661558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B127,B23,B32 |
Chr6:34662861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:34662891 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B37,B40,B9,C38 |
Chr6:34662969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B65,C18,C49 |
Chr6:34663807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,B59 |
Chr6:34664489 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769133.1PF01554
MatE 143-310 aa
PF01554
MatE 375-529 aa
XP_057769134.1PF01554
MatE 143-310 aa
PF01554
MatE 375-529 aa
XP_057769135.1PF01554
MatE 143-310 aa
PF01554
MatE 375-529 aa
XP_057769137.1PF01554
MatE 143-310 aa
PF01554
MatE 375-529 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769133.1 |
Pfam | PF01554 |
MatE | Family | 143 | 310 | 1.8e-25 | 90.2 | MatE |
XP_057769133.1 |
Pfam | PF01554 |
MatE | Family | 375 | 529 | 1.8e-25 | 90.2 | MatE |
XP_057769134.1 |
Pfam | PF01554 |
MatE | Family | 143 | 310 | 1.8e-25 | 90.2 | MatE |
XP_057769134.1 |
Pfam | PF01554 |
MatE | Family | 375 | 529 | 1.8e-25 | 90.2 | MatE |
XP_057769135.1 |
Pfam | PF01554 |
MatE | Family | 143 | 310 | 1.8e-25 | 90.2 | MatE |
XP_057769135.1 |
Pfam | PF01554 |
MatE | Family | 375 | 529 | 1.8e-25 | 90.2 | MatE |
XP_057769137.1 |
Pfam | PF01554 |
MatE | Family | 143 | 310 | 1.8e-25 | 90.2 | MatE |
XP_057769137.1 |
Pfam | PF01554 |
MatE | Family | 375 | 529 | 1.8e-25 | 90.2 | MatE |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。