Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002388`

染色体: Chr06 坐标: 34685125-34689635 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002388`
名称	SmilChr06G002388
描述	mitochondrial import inner membrane translocase subunit TIM44-2
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	34685125 - 34689635 / `+`

ID 对照

NCBI Gene ID	`LOC130989208`
GeneID	`130989208`
locus_tag	`-`
NCBI Name	`LOC130989208`
原始查询	`SmilChr06G002388`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitochondrial import inner membrane translocase subunit TIM44-2
产物	mitochondrial import inner membrane translocase subunit TIM44-2
Arabidopsis	`AT2G36070` (TIM44-2) translocase inner membrane subunit 44-2 [Source:NCBI gene (formerly Entrezgene);Acc:818180] identity=57.8; qcov=0.995; evalue=8.93e-168; confidence=high
Rice	`Os07g0409700` (P0492E07.122) - identity=55.1; qcov=1; evalue=8.13e-154; confidence=high
GO	GO:0005743 (mitochondrial inner membrane); GO:0030150 (protein import into mitochondrial matrix); GO:0051087 (protein-folding chaperone binding)
KEGG	-
Pfam	PF04280 (Tim44)
InterPro	-
eggNOG	-
NR	GeneID:130989208

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057769145.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057769145.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057769145.1`
4	Nucleus	细胞核	0.00000	`XP_057769145.1`
5	Chromosome	染色体	0.00000	`XP_057769145.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:34686034`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr6:34687289`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr6:34687400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:34687489`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B111,B3,B70,C62
`Chr6:34687517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr6:34687672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,B62
`Chr6:34688106`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B139,B82,C20
`Chr6:34688109`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B26,B47,B57,B90,B92
`Chr6:34688253`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B65,C18,C49
`Chr6:34688742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:34688957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B105,B134,B84,C18,C37
`Chr6:34689259`	`CTG`	`C`	2bp_deletion	frameshift_variant	1	C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769145.1

485 aa

242

485

Tim44

PF04280 Tim44 327-478 aa

XP_057769146.1

405 aa

202

405

Tim44

PF04280 Tim44 247-398 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769145.1`	Pfam	`PF04280`	Tim44	Domain	327	478	2.4e-40	138.7	Tim44-like domain
`XP_057769146.1`	Pfam	`PF04280`	Tim44	Domain	247	398	1.9e-40	139.1	Tim44-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913162.1
AAAGGTCGAAAAACAGTACTAGTACTAGTAAAAATAAAATAATTCGATATTTATTTTTTATTTTCCTGATAATAGCATTAGGGCACATTCCCCTTTCGCAAGCTATCTCCTTCCATTGTCCGCAACACATAAAATGCCATAAAACCCTAATTCAAACCCTCCACTCTTATTTCTTCTCCATCCATATCAAATTGAATCTGCAAATATTGTAGATTTTAAAGAATCTCATGGCCACCAGAAAGCTCGCCAGAGATTTGTTC...

XM_057913163.1
ACGCGAGTTCGGCGTTTTTAATGAGTTCTCCAAGAAGATCAAAGGGGAAGTTGAAAAAAATCCGGACCTGCAGAAATCGCTGAAGGAAATGAAAGAGAAAGCGGAAGAACTCAAAGGAGTCACAGAGAGTCTGCAAATGAGGCTGGCAGAAACTTCCACTGGGGGCTGAGATGGTGAAATGGCGAAATGCAGAACGAAGCAGACTACTGAGCAGCTGTTGAAGCACGCAGGTGGTGTCTTGACGGAGGCTGAAGTGAAGG...

CDS

2 records

下载 CDS FASTA

LOC130989208
ATGGCCACCAGAAAGCTCGCCAGAGATTTGTTCTTGTCAAGGCATCTTGTTCTTCGTCGACAACTATTATTACCTCAACAGGTTTCGAGGCCTCCAAATGCGTACCTGTTTAGACGCGAGTTCGGCGTTTTTAATGAGTTCTCCAAGAAGATCAAAGGGGAAGTTGAAAAAAATCCGGACCTGCAGAAATCGCTGAAGGAAATGAAAGAGAAAGCGGAAGAACTCAAAGGAGTCACAGAGAGTCTGCAAATGAGAACGAA...

LOC130989208
ATGGCGAAATGCAGAACGAAGCAGACTACTGAGCAGCTGTTGAAGCACGCAGGTGGTGTCTTGACGGAGGCTGAAGTGAAGGCGAAAAAGGTTTATGCTGATGTAGAAGAAAAAATTTCAACTGCAAAAGAGGAGGTAAAAGAAAAACTTGATTTTGGAAAACAAAAGCCTACAGGAGAGGATGGAACTGCCGCTAGTGGAAACACAAGCAACAAGGATGGAAGCAATGCTTCGTCTGGTGAAGAAAAGCAACATCAGTC...

Protein

2 records

下载 Protein FASTA

XP_057769145.1
MATRKLARDLFLSRHLVLRRQLLLPQQVSRPPNAYLFRREFGVFNEFSKKIKGEVEKNPDLQKSLKEMKEKAEELKGVTESLQMRTKQTTEQLLKHAGGVLTEAEVKAKKVYADVEEKISTAKEEVKEKLDFGKQKPTGEDGTAASGNTSNKDGSNASSGEEKQHQSESGDGAESLFNRVKSGVSSMSPKMSSAFHKLKEAKPVDLVKKGYDIVKDELKGNPNRRKRLGYDASSAATPSAKIEKSTRTDIVVVPTKQSAW...

XP_057769146.1
MAKCRTKQTTEQLLKHAGGVLTEAEVKAKKVYADVEEKISTAKEEVKEKLDFGKQKPTGEDGTAASGNTSNKDGSNASSGEEKQHQSESGDGAESLFNRVKSGVSSMSPKMSSAFHKLKEAKPVDLVKKGYDIVKDELKGNPNRRKRLGYDASSAATPSAKIEKSTRTDIVVVPTKQSAWSKKWDAFKNKMQGNPVFKRVSGFSEPVIEKSQEIAEDMRERWETSDHPVVHKIQDISETVLGESDAAMSFKEIRRRDPTF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器