当前解析结果
SmilChr06G002420| 统一新 Gene ID | SmilChr06G002420 |
|---|---|
| 名称 | SmilChr06G002420 |
| 描述 | alanine--tRNA ligase, chloroplastic/mitochondrial |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 34934909 - 34940362 / - |
| NCBI Gene ID | LOC130989223 |
|---|---|
| GeneID | 130989223 |
| locus_tag | - |
| NCBI Name | LOC130989223 |
| 原始查询 | SmilChr06G002420 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alanine--tRNA ligase, chloroplastic/mitochondrial |
| 产物 | alanine--tRNA ligase%2C chloroplastic/mitochondrial |
| Arabidopsis | AT5G22800 (EMB1030)Alanyl-tRNA synthetase, class IIc [Source:NCBI gene (formerly Entrezgene);Acc:832343] identity=74.5; qcov=0.91; evalue=0; confidence=high |
| Rice | Os10g0182000- identity=33.5; qcov=0.976; evalue=1.01e-151; confidence=low |
| GO | GO:0002161 (aminoacyl-tRNA deacylase activity); GO:0003676 (nucleic acid binding); GO:0004813 (alanine-tRNA ligase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0006400 (tRNA modification); GO:0006419 (alanyl-tRNA aminoacylation); GO:0009507 (chloroplast); GO:0016597 (amino acid binding) |
| KEGG | smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01411 (tRNA-synt_2c); PF02272 (DHHA1); PF07973 (tRNA_SAD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989223 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057769156.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057769156.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057769156.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769156.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769156.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:34935106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B6 |
Chr6:34935109 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C73 |
Chr6:34935109 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C73 |
Chr6:34935161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B27,B32,B57 |
Chr6:34935244 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B67 |
Chr6:34935244 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B67 |
Chr6:34935298 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr6:34935338 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr6:34935682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,C81,C86 |
Chr6:34935692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr6:34935810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B27,B32,B57 |
Chr6:34935962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769156.1PF01411
tRNA-synt_2c 95-658 aa
PF07973
tRNA_SAD 756-799 aa
PF02272
DHHA1 877-980 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769156.1 |
Pfam | PF01411 |
tRNA-synt_2c | Family | 95 | 658 | 2.9e-192 | 640.8 | tRNA synthetases class II (A) |
XP_057769156.1 |
Pfam | PF07973 |
tRNA_SAD | Domain | 756 | 799 | 2.6e-17 | 63.2 | Threonyl and Alanyl tRNA synthetase second additional domain |
XP_057769156.1 |
Pfam | PF02272 |
DHHA1 | Domain | 877 | 980 | 3.9e-17 | 63.3 | DHHA1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。