当前解析结果
SmilChr06G002445| 统一新 Gene ID | SmilChr06G002445 |
|---|---|
| 名称 | SmilChr06G002445 |
| 描述 | pentatricopeptide repeat-containing protein At2g17033 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 35177582 - 35179107 / - |
| NCBI Gene ID | LOC130989249 |
|---|---|
| GeneID | 130989249 |
| locus_tag | - |
| NCBI Name | LOC130989249 |
| 原始查询 | SmilChr06G002445 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At2g17033 |
| 产物 | pentatricopeptide repeat-containing protein At2g17033 |
| Arabidopsis | AT2G17033 (AT2G17033)pentatricopeptide (PPR) repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816207] identity=52.8; qcov=0.933; evalue=8.83e-153; confidence=high |
| Rice | Os02g0120000- identity=34; qcov=1.03; evalue=3.43e-69; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989249 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057769188.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057769188.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057769188.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769188.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769188.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:35177820 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr6:35177889 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,C49 |
Chr6:35178239 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,C49 |
Chr6:35178242 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B66,B98 |
Chr6:35178563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr6:35178607 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B66,B98 |
Chr6:35178680 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr6:35178712 |
G |
A |
EMS_canonical_SNV | stop_gained | 56 | A1,A14,A18,A2,A20,A21,A22,A24,B104,B111,B115,B119,B122,B124,B125,B126,B13,B137,B19,B20,B28,B33,B40,B42,B43,B46,B53,B57,B70,B80,B82,B85,B87,B89,B90,B97,C1,C12,C14,C16,C42,C45,C52,C53,C56,C57,C58,C60,C61,C62,C66,C7,C72,C8,C86,C87 |
Chr6:35178804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,A24,C43 |
Chr6:35178839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,A24,B80,C43,C61 |
Chr6:35178859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr6:35178883 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769188.1PF01535
PPR 185-213 aa
PF01535
PPR 222-248 aa
PF13812
PPR_3 243-297 aa
PF13041
PPR_2 251-297 aa
PF01535
PPR 253-283 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769188.1 |
Pfam | PF01535 |
PPR | Repeat | 185 | 213 | 6e-15 | 55.1 | PPR repeat |
XP_057769188.1 |
Pfam | PF01535 |
PPR | Repeat | 222 | 248 | 6e-15 | 55.1 | PPR repeat |
XP_057769188.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 243 | 297 | 2.4e-05 | 25.1 | Pentatricopeptide repeat domain |
XP_057769188.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 251 | 297 | 2.1e-16 | 60.5 | PPR repeat family |
XP_057769188.1 |
Pfam | PF01535 |
PPR | Repeat | 253 | 283 | 6e-15 | 55.1 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。