当前解析结果
SmilChr06G002457| 统一新 Gene ID | SmilChr06G002457 |
|---|---|
| 名称 | SmilChr06G002457 |
| 描述 | uncharacterized SmilChr06G002457 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 35368508 - 35374234 / + |
| NCBI Gene ID | LOC130990826 |
|---|---|
| GeneID | 130990826 |
| locus_tag | - |
| NCBI Name | LOC130990826 |
| 原始查询 | SmilChr06G002457 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pre-mRNA processing ribonucleoprotein binding region-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842312]; symbol=emb1220; hit=AT1G60170; species=arabidopsis; confidence=weak |
| 产物 | pre-mRNA processing ribonucleoprotein binding region-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842312]; symbol=emb1220; hit=AT1G60170; species=arabidopsis; confidence=weak |
| Arabidopsis | AT1G60170 (emb1220)pre-mRNA processing ribonucleoprotein binding region-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842312] identity=55.7; qcov=0.265; evalue=4.38e-10; confidence=weak |
| Rice | Os07g0141600 (OJ1351_C05.114)- identity=49.2; qcov=0.265; evalue=5.67e-08; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990826 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771043.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057771043.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057771043.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057771043.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057771043.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:35368523 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:35368527 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B66,B98 |
Chr6:35368549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B66,B98 |
Chr6:35368555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B62,B66,B98 |
Chr6:35368587 |
CCA |
C |
2bp_deletion | frameshift_variant | 18 | A11,A7,A8,B112,B115,B132,B20,B77,B79,B90,B92,B93,C1,C21,C34,C41,C51,C7 |
Chr6:35368600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr6:35368612 |
T |
TC |
1bp_insertion | frameshift_variant | 5 | A16,B57,B90,B92,C26 |
Chr6:35368612 |
T |
TC |
1bp_insertion | CDS_variant | 5 | A16,B57,B90,B92,C26 |
Chr6:35368639 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B62 |
Chr6:35368647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B66,B98 |
Chr6:35368740 |
ACT |
A |
2bp_deletion | frameshift_variant | 14 | A21,B119,B120,B122,B21,B30,B42,B43,B56,B96,C13,C26,C36,C87 |
Chr6:35368780 |
AAT |
A |
2bp_deletion | frameshift_variant | 120 | A10,A14,A16,A18,A19,A21,A22,A25,A3,A6,B1,B100,B102,B103,B111,B113,B114,B117,B12,B120,B124,B126,B128,B13,B130,B131,B133,B134,B137,B138,B139,B15,B21,B24,B27,B28,B29,B30,B31,B32,B35,B37,B4,B41,B42,B43,B44,B45,B49,B51,B53,B54,B55,B56,B57,B59,B60,B61,B62,B65,B66,B69,B72,B74,B78,B81,B82,B83,B85,B89,B90,B91,B94,B95,B96,C1,C12,C13,C15,C16,C18,C19,C2,C20,C24,C27,C3,C36,C38,C40,C42,C43,C44,C45,C47,C5,C50,C52,C54,C55,C58,C60,C64,C65,C67,C74,C80,C81,C82,C85,C86,C87,C9,D1,D10,D11,D3,D5,D6,D7 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。