当前解析结果
SmilChr06G002507| 统一新 Gene ID | SmilChr06G002507 |
|---|---|
| 名称 | SmilChr06G002507 |
| 描述 | uncharacterized SmilChr06G002507 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 35948397 - 35949383 / + |
| NCBI Gene ID | LOC130990837 |
|---|---|
| GeneID | 130990837 |
| locus_tag | - |
| NCBI Name | LOC130990837 |
| 原始查询 | SmilChr06G002507 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0587600; species=rice; confidence=weak |
| 产物 | hit=Os03g0587600; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os03g0587600- identity=63.6; qcov=0.101; evalue=1.4e-07; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990837 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057771053.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057771053.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057771053.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057771053.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771053.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:35948423 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B3,B75 |
Chr6:35948434 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,B73 |
Chr6:35948436 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B69,C54 |
Chr6:35948441 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | A4,B3 |
Chr6:35948441 |
TG |
T |
1bp_deletion | CDS_variant | 2 | A4,B3 |
Chr6:35948443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B6 |
Chr6:35948456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr6:35948461 |
G |
A |
EMS_canonical_SNV | stop_gained | 7 | A15,B106,B20,B26,B73,C61,C74 |
Chr6:35948482 |
AC |
A |
1bp_deletion | frameshift_variant | 4 | A3,B69,B92,C54 |
Chr6:35948482 |
AC |
A |
1bp_deletion | CDS_variant | 4 | A3,B69,B92,C54 |
Chr6:35948494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B86,C71 |
Chr6:35948505 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,C77 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。