Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002512`

染色体: Chr06 坐标: 36013502-36016399 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002512`
名称	SmilChr06G002512
描述	rac-like GTP-binding protein ARAC3
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	36013502 - 36016399 / `-`

ID 对照

NCBI Gene ID	`LOC130989311`
GeneID	`130989311`
locus_tag	`-`
NCBI Name	`LOC130989311`
原始查询	`SmilChr06G002512`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rac-like GTP-binding protein ARAC3
产物	rac-like GTP-binding protein ARAC3
Arabidopsis	`AT4G35020` (RAC3) RAC-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:829654] identity=91.4; qcov=1; evalue=1.04e-129; confidence=high
Rice	`Os02g0312600` (OSRAC7) - identity=86.4; qcov=1; evalue=1.77e-129; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005634 (nucleus); GO:0005856 (cytoskeleton); GO:0005886 (plasma membrane); GO:0005938 (cell cortex); GO:0007015 (actin filament organization); GO:0007163 (establishment or maintenance of cell polarity); GO:0007264 (small GTPase-mediated signal transduction); GO:0008360 (regulation of cell shape); GO:0019901 (protein kinase binding); GO:0030865 (cortical cytoskeleton organization); GO:0031410 (cytoplasmic vesicle); GO:0032956 (regulation of actin cytoskeleton organization); GO:0042995 (cell projection)
KEGG	smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04518 (Integrin signaling - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)); smil04620 (Toll-like receptor signaling pathway - Salvia miltiorrhiza (redroot sage)); smil05100 (Bacterial invasion of epithelial cells - Salvia miltiorrhiza (redroot sage))
Pfam	PF00071 (Ras); PF08477 (Roc)
InterPro	-
eggNOG	-
NR	GeneID:130989311

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057769254.1`
2	Cytosol	细胞质基质	0.60000	`XP_057769254.1`
3	Cytoplasm	细胞质	0.40000	`XP_057769254.1`
4	Cell projection	细胞突起	0.20000	`XP_057769254.1`
5	Melanosome	Melanosome	0.20000	`XP_057769254.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:36015001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C82
`Chr6:36015197`	`C`	`CAT`	2bp_insertion	frameshift_variant	1	B115
`Chr6:36015197`	`C`	`CAT`	2bp_insertion	CDS_variant	1	B115

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769254.1

198 aa

198

Roc

Ras

PF08477 Roc 8-121 aa PF00071 Ras 8-178 aa

XP_057769255.1

198 aa

198

Roc

Ras

PF08477 Roc 8-121 aa PF00071 Ras 8-178 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769254.1`	Pfam	`PF08477`	Roc	Domain	8	121	5.9e-24	85.3	Ras of Complex, Roc, domain of DAPkinase
`XP_057769254.1`	Pfam	`PF00071`	Ras	Domain	8	178	3e-51	173.9	Ras family
`XP_057769255.1`	Pfam	`PF08477`	Roc	Domain	8	121	5.9e-24	85.3	Ras of Complex, Roc, domain of DAPkinase
`XP_057769255.1`	Pfam	`PF00071`	Ras	Domain	8	178	3e-51	173.9	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913271.1
TAGAAAAAACGACCAGAAAATATCAACACATAAAATTCAAACACCATAGAAATTAGAAAAAACGACCAGAAAAAATCAAGAGAAAGATTCTGCGAGGGATTGTTGATTCGGTTAGAAAATTTGGAGCAATAAATCCGAGCTCGATAGTTCACCGGTTGTGGAGAAGTCGCCGGTGACGAGATGAGCGCCTCCAGGTTCATAAAATGCGTCACCGTCGGCGACGGAGCCGTCGGCAAAACTTGCTTGCTCATTTCCTACAC...

XM_057913272.1
AAGACAATTGACTGTTTTGGACTCTCTCTCTCTCTCTAAGCATACACTGTTTTACCTCACTCTGCATCTGAATTTTAACTGACAATGAATACAGCTGTTGGATTCTGCGAGGGATTGTTGATTCGGTTAGAAAATTTGGAGCAATAAATCCGAGCTCGATAGTTCACCGGTTGTGGAGAAGTCGCCGGTGACGAGATGAGCGCCTCCAGGTTCATAAAATGCGTCACCGTCGGCGACGGAGCCGTCGGCAAAACTTGCTT...

CDS

2 records

下载 CDS FASTA

LOC130989311
ATGAGCGCCTCCAGGTTCATAAAATGCGTCACCGTCGGCGACGGAGCCGTCGGCAAAACTTGCTTGCTCATTTCCTACACCAGCAACACCTTTCCTACGGATTACGTCCCAACTGTGTTCGACAATTTTAGTGCCAATGTTGTGGTGGATGGGAGCACTGTTAATCTAGGACTGTGGGACACTGCTGGTCAGGAGGATTACAATAGATTAAGACCACTAAGCTACCGTGGAGCCGATGTCTTTATACTTGCATTCTCCCT...

Protein

2 records

下载 Protein FASTA

XP_057769254.1
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVPKKWIPELRHYAPGVPIILVGTKLDLREDKQFFVDHPGAVPISTAQGEELKKMIGASAFIECSAKTQQNVKAVFDAAIKVVLQPPKQRKKKKRKGQKACSIL

XP_057769255.1
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVPKKWIPELRHYAPGVPIILVGTKLDLREDKQFFVDHPGAVPISTAQGEELKKMIGASAFIECSAKTQQNVKAVFDAAIKVVLQPPKQRKKKKRKGQKACSIL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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