当前解析结果
SmilChr06G002514| 统一新 Gene ID | SmilChr06G002514 |
|---|---|
| 名称 | SmilChr06G002514 |
| 描述 | beta-galactosidase 13-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 36030446 - 36042247 / + |
| NCBI Gene ID | LOC130989312 |
|---|---|
| GeneID | 130989312 |
| locus_tag | - |
| NCBI Name | LOC130989312 |
| 原始查询 | SmilChr06G002514 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-galactosidase 13-like |
| 产物 | beta-galactosidase 13-like |
| Arabidopsis | AT2G16730 (AT2G16730)glycosyl hydrolase family 35 protein [Source:NCBI gene (formerly Entrezgene);Acc:816174] identity=56.1; qcov=0.958; evalue=0; confidence=high |
| Rice | Os08g0549200 (OsBgal10)- identity=52.1; qcov=0.964; evalue=0; confidence=high |
| GO | GO:0004565 (beta-galactosidase activity); GO:0005618 (cell wall); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF01301 (Glyco_hydro_35); PF02140 (SUEL_Lectin); PF02449 (Glyco_hydro_42); PF17834 (GHD); PF21467 (BetaGal_gal-bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989312 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057769256.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057769256.1 |
| 3 | Secreted | 分泌到胞外 | 0.40000 | XP_057769256.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769256.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769256.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:36030686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr6:36030704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,C17,C27,C48 |
Chr6:36030716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,B63,B65,C49 |
Chr6:36030800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,B125,C87 |
Chr6:36031230 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr6:36031233 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | C41 |
Chr6:36031233 |
T |
TA |
1bp_insertion | CDS_variant | 1 | C41 |
Chr6:36031261 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C41 |
Chr6:36031261 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C41 |
Chr6:36031264 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C41 |
Chr6:36035524 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,A19,B110,B86,D6 |
Chr6:36035532 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769256.1PF01301
Glyco_hydro_35 39-345 aa
PF02449
Glyco_hydro_42 61-208 aa
PF17834
GHD 370-425 aa
PF21467
BetaGal_gal-bd 625-690 aa
PF02140
SUEL_Lectin 749-829 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769256.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 39 | 345 | 1.7e-113 | 380.2 | Glycosyl hydrolases family 35 |
XP_057769256.1 |
Pfam | PF02449 |
Glyco_hydro_42 | Domain | 61 | 208 | 2.4e-07 | 31.2 | Beta-galactosidase |
XP_057769256.1 |
Pfam | PF17834 |
GHD | Domain | 370 | 425 | 2.3e-21 | 76.0 | Beta-sandwich domain in beta galactosidase |
XP_057769256.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 625 | 690 | 1.2e-28 | 99.8 | Beta-galactosidase, galactose-binding domain |
XP_057769256.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 749 | 829 | 1.6e-18 | 67.5 | D-galactoside/L-rhamnose binding SUEL lectin domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。