当前解析结果
SmilChr06G002521| 统一新 Gene ID | SmilChr06G002521 |
|---|---|
| 名称 | SmilChr06G002521 |
| 描述 | subtilisin-like protease SBT1.6 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 36159650 - 36162322 / - |
| NCBI Gene ID | LOC130989318 |
|---|---|
| GeneID | 130989318 |
| locus_tag | - |
| NCBI Name | LOC130989318 |
| 原始查询 | SmilChr06G002521 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | subtilisin-like protease SBT1.6 |
| 产物 | subtilisin-like protease SBT1.6 |
| Arabidopsis | AT4G34980 (SLP2)subtilisin-like serine protease 2 [Source:NCBI gene (formerly Entrezgene);Acc:829650] identity=73.7; qcov=0.961; evalue=0; confidence=high |
| Rice | Os03g0242900 (OsSub28)- identity=65.1; qcov=0.952; evalue=0; confidence=high |
| GO | GO:0004252 (serine-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00082 (Peptidase_S8); PF02225 (PA); PF05922 (Inhibitor_I9); PF17766 (fn3_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989318 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057769263.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057769263.1 |
| 3 | Cell wall | 细胞壁 | 0.20000 | XP_057769263.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769263.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769263.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:36159947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B35,C23 |
Chr6:36160019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr6:36160025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B34,C85,D10 |
Chr6:36160036 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B84,C82 |
Chr6:36160247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:36160445 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,C85,D10 |
Chr6:36160459 |
CA |
C |
1bp_deletion | frameshift_variant | 109 | A10,A11,A14,A18,A2,A20,A21,A23,A7,A8,B1,B100,B102,B103,B104,B106,B107,B108,B109,B112,B114,B115,B118,B119,B12,B131,B132,B14,B140,B15,B17,B2,B20,B21,B24,B28,B29,B30,B31,B32,B34,B35,B36,B4,B40,B47,B48,B51,B57,B59,B62,B64,B66,B67,B7,B73,B74,B76,B77,B78,B79,B81,B82,B90,B92,B93,B98,C1,C13,C15,C18,C20,C21,C22,C23,C25,C28,C29,C30,C33,C34,C35,C37,C39,C40,C42,C43,C48,C49,C51,C56,C59,C60,C61,C63,C7,C73,C74,C75,C79,C86,C87,D1,D11,D3,D4,D5,D6,D7 |
Chr6:36160602 |
A |
AG |
1bp_insertion | frameshift_variant | 24 | A1,B102,B105,B115,B121,B24,B34,B54,B94,B95,B97,B99,C14,C26,C27,C40,C49,C56,C61,C62,C64,C69,C82,D4 |
Chr6:36160613 |
A |
AAT |
2bp_insertion | frameshift_variant | 22 | A1,B105,B115,B121,B24,B34,B43,B54,B94,B95,C14,C26,C27,C40,C49,C56,C61,C62,C64,C69,C82,D4 |
Chr6:36160624 |
TC |
T |
1bp_deletion | frameshift_variant | 25 | A1,B102,B105,B115,B121,B24,B34,B43,B49,B54,B57,B94,B95,C14,C26,C27,C40,C49,C56,C61,C62,C64,C69,C82,D4 |
Chr6:36160671 |
A |
ATG |
2bp_insertion | frameshift_variant | 2 | A1,C62 |
Chr6:36160671 |
A |
ATG |
2bp_insertion | CDS_variant | 2 | A1,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769263.1PF05922
Inhibitor_I9 54-126 aa
PF00082
Peptidase_S8 149-611 aa
PF02225
PA 410-485 aa
PF17766
fn3_6 684-789 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769263.1 |
Pfam | PF05922 |
Inhibitor_I9 | Domain | 54 | 126 | 8.8e-13 | 49.5 | Peptidase inhibitor I9 |
XP_057769263.1 |
Pfam | PF00082 |
Peptidase_S8 | Domain | 149 | 611 | 1.4e-46 | 159.9 | Subtilase family |
XP_057769263.1 |
Pfam | PF02225 |
PA | Domain | 410 | 485 | 4.1e-13 | 50.0 | PA domain |
XP_057769263.1 |
Pfam | PF17766 |
fn3_6 | Domain | 684 | 789 | 4.1e-26 | 91.8 | Fibronectin type-III domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。