当前解析结果
SmilChr06G002536| 统一新 Gene ID | SmilChr06G002536 |
|---|---|
| 名称 | SmilChr06G002536 |
| 描述 | uncharacterized SmilChr06G002536 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 36388679 - 36390750 / - |
| NCBI Gene ID | LOC130989333 |
|---|---|
| GeneID | 130989333 |
| locus_tag | - |
| NCBI Name | LOC130989333 |
| 原始查询 | SmilChr06G002536 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | PLC-like phosphodiesterases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830025]; symbol=AT4G38690; hit=AT4G38690; species=arabidopsis; confidence=high |
| 产物 | PLC-like phosphodiesterases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830025]; symbol=AT4G38690; hit=AT4G38690; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G38690 (AT4G38690)PLC-like phosphodiesterases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830025] identity=72.6; qcov=1; evalue=0; confidence=high |
| Rice | Os09g0535900- identity=68.9; qcov=1; evalue=5.93e-173; confidence=high |
| GO | GO:0006629 (lipid metabolic process); GO:0008081 (phosphoric diester hydrolase activity) |
| KEGG | - |
| Pfam | PF00388 (PI-PLC-X) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989333 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057769277.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057769277.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057769277.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769277.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769277.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:36388938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B12,B32,C73,C86 |
Chr6:36389093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr6:36389124 |
C |
CT |
1bp_insertion | frameshift_variant | 58 | A13,A14,A15,A24,A3,B109,B111,B112,B121,B123,B13,B130,B139,B14,B15,B26,B30,B34,B47,B54,B55,B56,B62,B63,B69,B70,B74,B78,B79,B86,B88,B89,B9,B92,B93,B99,C10,C2,C20,C23,C24,C25,C26,C42,C44,C46,C49,C56,C57,C6,C67,C75,C78,C8,C82,C83,C84,D6 |
Chr6:36389184 |
C |
T |
EMS_canonical_SNV | stop_gained | 68 | A13,A14,A15,A24,B109,B111,B112,B121,B123,B125,B126,B13,B130,B139,B14,B15,B22,B26,B3,B30,B34,B37,B38,B47,B55,B56,B62,B63,B69,B7,B70,B74,B78,B79,B86,B88,B89,B9,B93,B95,B99,C1,C10,C12,C14,C2,C20,C23,C24,C25,C26,C35,C42,C44,C49,C53,C56,C57,C6,C60,C66,C67,C75,C8,C82,C83,C84,D6 |
Chr6:36389277 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B64,B66,B98 |
Chr6:36389364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,B81 |
Chr6:36389372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,C31,C34,C53 |
Chr6:36389374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B135,B25,C27 |
Chr6:36389380 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,C20,C71 |
Chr6:36389384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,B71,C74 |
Chr6:36389387 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B69,C16,C23 |
Chr6:36389393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769277.1PF00388
PI-PLC-X 63-174 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769277.1 |
Pfam | PF00388 |
PI-PLC-X | Family | 63 | 174 | 3e-10 | 40.6 | Phosphatidylinositol-specific phospholipase C, X domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。