Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002554

染色体: Chr06 坐标: 36711723-36717654 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002554
名称SmilChr06G002554
描述glycosyltransferase BC10
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向36711723 - 36717654 / -

ID 对照

NCBI Gene IDLOC130989349
GeneID130989349
locus_tag-
NCBI NameLOC130989349
原始查询SmilChr06G002554

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述glycosyltransferase BC10
产物glycosyltransferase BC10
ArabidopsisAT5G14550 (AT5G14550)
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831306]
identity=66.9; qcov=0.982; evalue=0; confidence=high
RiceOs05g0170000 (BC10)
-
identity=70.4; qcov=0.828; evalue=6.29e-165; confidence=high
GOGO:0016020 (membrane); GO:0016757 (glycosyltransferase activity)
KEGG-
PfamPF02485 (Branch)
InterPro-
eggNOG-
NRGeneID:130989349

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057769289.1
2 Golgi stack 高尔基堆 0.20000 XP_057769289.1
3 Nucleus 细胞核 0.00000 XP_057769289.1
4 Chromosome 染色体 0.00000 XP_057769289.1
5 Centromere 着丝粒 0.00000 XP_057769289.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:36712100 C T EMS_canonical_SNV CDS_variant 1 B104
Chr6:36714132 TA T 1bp_deletion frameshift_variant 1 B76
Chr6:36714132 TA T 1bp_deletion CDS_variant 1 B76
Chr6:36714145 G A EMS_canonical_SNV CDS_variant 3 B124,B18,C71
Chr6:36714894 C T EMS_canonical_SNV CDS_variant 2 B75,B98
Chr6:36715204 G A EMS_canonical_SNV CDS_variant 4 B107,B128,C19,C46
Chr6:36715270 C T EMS_canonical_SNV CDS_variant 1 C77
Chr6:36717099 C T EMS_canonical_SNV CDS_variant 4 B107,B64,B66,B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057769289.1
395 aa
N
1
198
395
Branch
C
PF02485 Branch 68-324 aa
XP_057769290.1
379 aa
N
1
190
379
Branch
C
PF02485 Branch 68-324 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769289.1 Pfam PF02485 Branch Family 68 324 1.6e-69 235.0 Core-2/I-Branching enzyme
XP_057769290.1 Pfam PF02485 Branch Family 68 324 1.4e-69 235.2 Core-2/I-Branching enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057913307.1
GAAAGGATTAGGCAGTGTCGGGCAGAACACGCAAGGAAGCATAAAAGTGGAAAAAACACTCAGTGTCTATTCCTACTTCCAATCATATAATCTCACTTTCTAAGCCAAGTTTCTCTCTCTAGCTTCGTTTCCACTACTGAATCAAGTGATTTAGTAATTTCCACTGGAATCTGGAGTAAATAATTCGAGCTTCCGATTTTGTTGCCATCAGATTCTCTCATAGCTCGTGAAGCTGATCACTTCTCTGCTAATCCGTGACT...
XM_057913306.1
AGTGTCTATTCCTACTTCCAATCATATAATCTCACTTTCTAAGCCAAGTTTCTCTCTCTAGCTTCGTTTCCACTACTGAATCAAGTGATTTAGTAATTTCCACTGGAATCTGGAGTAAATAATTCGAGCTTCCGATTTTGTTGCCATCAGATTCTCTCATAGCTCGTGAAGCTGATCACTTCTCTGCTAATCCGTGACTGTTTCACGGAATTCTAGAATTTTTGCCGATTTTTTAAGTTTTTATCTGTTCACCGATCTAT...

CDS

2 records

下载 CDS FASTA
LOC130989349
ATGCTGAGCCCTAAATTAGGAGCTCAGTTAGAGCGGATGAAGCGGAGGTCGAATTCGGGGAAATTTCATCACAGGTGGAAGCGAAAATTCTTCGCGTTTCTTTTGATTGCGATTTGTTTCGCGACGTTTCTGTTGATGGAATCAGAGTACAGTAAGATCAAAATGCCTTCGTTAATATCTCCGACGCTGCAGAAGCCGAAGATTGCTTTTCTTTTTATTGCTCGGAATCGGATTCCTCTCGACATTGTTTGGGATGTATT...
LOC130989349
ATGCTGAGCCCTAAATTAGGAGCTCAGTTAGAGCGGATGAAGCGGAGGTCGAATTCGGGGAAATTTCATCACAGGTGGAAGCGAAAATTCTTCGCGTTTCTTTTGATTGCGATTTGTTTCGCGACGTTTCTGTTGATGGAATCAGAGTACAGTAAGATCAAAATGCCTTCGTTAATATCTCCGACGCTGCAGAAGCCGAAGATTGCTTTTCTTTTTATTGCTCGGAATCGGATTCCTCTCGACATTGTTTGGGATGTATT...

Protein

2 records

下载 Protein FASTA
XP_057769289.1
MLSPKLGAQLERMKRRSNSGKFHHRWKRKFFAFLLIAICFATFLLMESEYSKIKMPSLISPTLQKPKIAFLFIARNRIPLDIVWDVFFQGDTENRFSIYVHSRPGFLLNAATTRSKFFLNRQVNDSVQVDWGEASMIQAERILLQGALMDPFNERFLFLSDSCIPLYNFSYTYDYIMSTPNSFVDSFADKKESRYNPKMHPVISVDNWRKGSQWVVLTRKHAGVVVEDKTVFSMFQLQCKRKSLPEFWRDRPIPADSSAE...
XP_057769290.1
MLSPKLGAQLERMKRRSNSGKFHHRWKRKFFAFLLIAICFATFLLMESEYSKIKMPSLISPTLQKPKIAFLFIARNRIPLDIVWDVFFQGDTENRFSIYVHSRPGFLLNAATTRSKFFLNRQVNDSVQVDWGEASMIQAERILLQGALMDPFNERFLFLSDSCIPLYNFSYTYDYIMSTPNSFVDSFADKKESRYNPKMHPVISVDNWRKGSQWVVLTRKHAGVVVEDKTVFSMFQLQCKRKSLPEFWRDRPIPADSSAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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