Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002561`

染色体: Chr06 坐标: 36784061-36787806 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002561`
名称	SmilChr06G002561
描述	cysteine-rich receptor-like protein kinase 42
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	36784061 - 36787806 / `-`

ID 对照

NCBI Gene ID	`LOC130989357`
GeneID	`130989357`
locus_tag	`-`
NCBI Name	`LOC130989357`
原始查询	`SmilChr06G002561`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cysteine-rich receptor-like protein kinase 42
产物	cysteine-rich receptor-like protein kinase 42
Arabidopsis	`AT5G40380` (CRK42) cysteine-rich RLK (RECEPTOR-like protein kinase) 42 [Source:NCBI gene (formerly Entrezgene);Acc:834036] identity=54.9; qcov=0.942; evalue=0; confidence=high
Rice	`Os05g0130100` - identity=48.8; qcov=0.746; evalue=3.26e-142; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130989357

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057769297.1`
2	Nucleus	细胞核	0.00000	`XP_057769297.1`
3	Chromosome	染色体	0.00000	`XP_057769297.1`
4	Centromere	着丝粒	0.00000	`XP_057769297.1`
5	Chromatin	染色质	0.00000	`XP_057769297.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:36784930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr6:36785001`	`G`	`GT`	1bp_insertion	frameshift_variant	121	A10,A11,A13,A14,A15,A18,A19,A20,A21,A22,A25,A3,A5,A7,A8,A9,B10,B103,B106,B107,B108,B109,B110,B111,B112,B114,B115,B117,B118,B121,B122,B123,B124,B125,B128,B129,B13,B132,B137,B138,B15,B18,B2,B20,B21,B24,B28,B3,B31,B35,B38,B39,B47,B49,B5,B51,B54,B56,B59,B6,B62,B65,B67,B69,B7,B70,B75,B77,B79,B82,B85,B86,B88,B9,B90,B92,B93,B95,B96,B97,B98,C1,C13,C14,C16,C18,C19,C21,C22,C26,C34,C36,C37,C41,C43,C45,C46,C49,C50,C51,C52,C53,C60,C61,C62,C63,C67,C70,C72,C76,C79,C82,C84,C85,C87,C9,D11,D4,D5,D6,D7
`Chr6:36785122`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C51,C74
`Chr6:36785371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C45,C52
`Chr6:36785437`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr6:36785520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr6:36785548`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr6:36785584`	`A`	`AAG`	2bp_insertion	frameshift_variant	91	A10,A11,A14,A18,A19,A20,A21,A24,A25,A5,A7,B102,B103,B106,B110,B114,B115,B12,B120,B122,B124,B125,B126,B138,B140,B16,B2,B20,B24,B28,B32,B33,B35,B42,B43,B46,B49,B5,B53,B56,B61,B62,B66,B69,B75,B78,B79,B80,B82,B86,B94,B96,B98,B99,C17,C18,C26,C27,C30,C33,C35,C36,C37,C4,C42,C43,C45,C48,C5,C52,C53,C58,C61,C63,C64,C65,C66,C70,C73,C77,C80,C81,C85,C86,C87,D10,D11,D3,D4,D5,D6
`Chr6:36785800`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,B139,B32,C4
`Chr6:36785810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr6:36786170`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C6
`Chr6:36786170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769297.1

704 aa

352

704

Stress-antifung

Pkinase

PK_Tyr_Ser-Thr

PF01657 Stress-antifung 56-128 aa PF01657 Stress-antifung 144-233 aa PF00069 Pkinase 319-540 aa PF07714 PK_Tyr_Ser-Thr 319-634 aa

XP_057769298.1

680 aa

340

680

Stress-antifung

Pkinase

PK_Tyr_Ser-Thr

PF01657 Stress-antifung 56-128 aa PF01657 Stress-antifung 144-233 aa PF00069 Pkinase 319-516 aa PF07714 PK_Tyr_Ser-Thr 319-610 aa

XP_057769299.1

678 aa

339

678

Stress-antifung

Pkinase

PK_Tyr_Ser-Thr

PF01657 Stress-antifung 56-128 aa PF01657 Stress-antifung 144-233 aa PF00069 Pkinase 319-605 aa PF07714 PK_Tyr_Ser-Thr 319-608 aa

XP_057769300.1

654 aa

327

654

Stress-antifung

Pkinase

PK_Tyr_Ser-Thr

PF01657 Stress-antifung 56-128 aa PF01657 Stress-antifung 144-233 aa PF00069 Pkinase 319-581 aa PF07714 PK_Tyr_Ser-Thr 319-584 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769297.1`	Pfam	`PF01657`	Stress-antifung	Family	56	128	5.7e-23	82.2	Salt stress response/antifungal
`XP_057769297.1`	Pfam	`PF01657`	Stress-antifung	Family	144	233	5.7e-23	82.2	Salt stress response/antifungal
`XP_057769297.1`	Pfam	`PF00069`	Pkinase	Domain	319	540	8.6e-40	137.5	Protein kinase domain
`XP_057769297.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	319	634	2.2e-41	142.6	Protein tyrosine and serine/threonine kinase
`XP_057769298.1`	Pfam	`PF01657`	Stress-antifung	Family	56	128	5e-23	82.3	Salt stress response/antifungal
`XP_057769298.1`	Pfam	`PF01657`	Stress-antifung	Family	144	233	5e-23	82.3	Salt stress response/antifungal
`XP_057769298.1`	Pfam	`PF00069`	Pkinase	Domain	319	516	4.4e-43	148.3	Protein kinase domain
`XP_057769298.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	319	610	1.7e-43	149.5	Protein tyrosine and serine/threonine kinase
`XP_057769299.1`	Pfam	`PF01657`	Stress-antifung	Family	56	128	5e-23	82.3	Salt stress response/antifungal
`XP_057769299.1`	Pfam	`PF01657`	Stress-antifung	Family	144	233	5e-23	82.3	Salt stress response/antifungal
`XP_057769299.1`	Pfam	`PF00069`	Pkinase	Domain	319	605	1.2e-40	140.3	Protein kinase domain
`XP_057769299.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	319	608	4.7e-43	148.1	Protein tyrosine and serine/threonine kinase
`XP_057769300.1`	Pfam	`PF01657`	Stress-antifung	Family	56	128	4.4e-23	82.5	Salt stress response/antifungal
`XP_057769300.1`	Pfam	`PF01657`	Stress-antifung	Family	144	233	4.4e-23	82.5	Salt stress response/antifungal
`XP_057769300.1`	Pfam	`PF00069`	Pkinase	Domain	319	581	6.5e-44	151.0	Protein kinase domain
`XP_057769300.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	319	584	3.7e-45	155.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057913314.1
TAAAAATGACTACACCTTTTTCTAATGAATGCGTTTCATCACAGTGCGAAAACGCAACTCCTCTTTGTTGTCCCTACAACTACCCTTCACTGCATCTGCACTAATTCTTCTTCAACACAATCATCAAACCCATCAACTAAATCAAAATCAAAATCAAACTCTCTCTCTACAACTTCTTCAACTCCCAACGCAATTCCGCGAAATCCACGAGATTTGCTGATTACATGCATTTACTAGCATGGATTACCGCTCTAATCTTC...

XM_057913315.1
AAAAATGACTACACCTTTTTCTAATGAATGCGTTTCATCACAGTGCGAAAACGCAACTCCTCTTTGTTGTCCCTACAACTACCCTTCACTGCATCTGCACTAATTCTTCTTCAACACAATCATCAAACCCATCAACTAAATCAAAATCAAAATCAAACTCTCTCTCTACAACTTCTTCAACTCCCAACGCAATTCCGCGAAATCCACGAGATTTGCTGATTACATGCATTTACTAGCATGGATTACCGCTCTAATCTTCG...

CDS

4 records

下载 CDS FASTA

LOC130989357
ATGCATTTACTAGCATGGATTACCGCTCTAATCTTCGTCGCCATCAATTTCCTCCCATTTTCCCTCTCCGACCCGCGAATTTCCGAGGCCCGCTTCTTGTGCAGCCTGGAGCGGCCGCCGGCGAACGCCAGCGCCTCCTACATCCCGCTCTTCGTGAGCGGGATGGAGGTCCTCTCGCAGCGAGTCACAGCAAACGAGTGGGGCAGCTACGCCGTGAACTCGACCAACACATCGATATACACCCTGGCGCAGTGCCACGC...

Protein

4 records

下载 Protein FASTA

XP_057769297.1
MHLLAWITALIFVAINFLPFSLSDPRISEARFLCSLERPPANASASYIPLFVSGMEVLSQRVTANEWGSYAVNSTNTSIYTLAQCHADLSRDDCLQCYAASRTRLPRCLPAAGGRIFLDGCFLRYDSYAFFNESVDPDSDAVNCNSTAPNSTLPEAEFRRRVVEVIDNVTAGAGRFAAVGIGGAFGLAECWNTVGAEGCKACLAKANSEIRRCLPSSEGRALNAGCYLRYSTQKFFSNQSDASNRDSGVSRRGVIVAIAF...

XP_057769298.1
MHLLAWITALIFVAINFLPFSLSDPRISEARFLCSLERPPANASASYIPLFVSGMEVLSQRVTANEWGSYAVNSTNTSIYTLAQCHADLSRDDCLQCYAASRTRLPRCLPAAGGRIFLDGCFLRYDSYAFFNESVDPDSDAVNCNSTAPNSTLPEAEFRRRVVEVIDNVTAGAGRFAAVGIGGAFGLAECWNTVGAEGCKACLAKANSEIRRCLPSSEGRALNAGCYLRYSTQKFFSNQSDASNRDSGVSRRGVIVAIAF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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