当前解析结果
SmilChr06G002562| 统一新 Gene ID | SmilChr06G002562 |
|---|---|
| 名称 | SmilChr06G002562 |
| 描述 | polyribonucleotide nucleotidyltransferase 2, mitochondrial |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 36809533 - 36816879 / - |
| NCBI Gene ID | LOC130989358 |
|---|---|
| GeneID | 130989358 |
| locus_tag | - |
| NCBI Name | LOC130989358 |
| 原始查询 | SmilChr06G002562 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | polyribonucleotide nucleotidyltransferase 2, mitochondrial |
| 产物 | polyribonucleotide nucleotidyltransferase 2%2C mitochondrial |
| Arabidopsis | AT5G14580 (AT5G14580)polyribonucleotide nucleotidyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:831309] identity=68.7; qcov=0.927; evalue=0; confidence=high |
| Rice | Os07g0168000 (PNP1)- identity=33.8; qcov=0.954; evalue=1.2e-132; confidence=low |
| GO | GO:0000175 (3'-5'-RNA exonuclease activity); GO:0000958 (mitochondrial mRNA catabolic process); GO:0000965 (mitochondrial RNA 3'-end processing); GO:0003723 (RNA binding); GO:0004654 (polyribonucleotide nucleotidyltransferase activity); GO:0005739 (mitochondrion); GO:0005829 (cytosol); GO:0009570 (chloroplast stroma) |
| KEGG | smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00575 (S1); PF01138 (RNase_PH); PF03725 (RNase_PH_C); PF03726 (PNPase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989358 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057769301.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057769301.1 |
| 3 | Mitochondrion matrix | 线粒体基质 | 0.20000 | XP_057769301.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769301.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769301.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:36809978 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B131,B83,C59,D10 |
Chr6:36810311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,C19 |
Chr6:36810821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,D10 |
Chr6:36810956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr6:36813286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B131,B83,C59 |
Chr6:36815137 |
G |
GTA |
2bp_insertion | frameshift_variant | 34 | A10,A4,B101,B111,B117,B121,B135,B2,B25,B27,B3,B38,B42,B43,B45,B51,B70,B74,B95,C1,C14,C27,C31,C4,C44,C56,C57,C6,C65,C72,C73,C78,D2,D9 |
Chr6:36815333 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:36816199 |
C |
CG |
1bp_insertion | frameshift_variant | 2 | C27,C62 |
Chr6:36816199 |
C |
CG |
1bp_insertion | CDS_variant | 2 | C27,C62 |
Chr6:36816469 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr6:36816562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769301.1PF01138
RNase_PH 67-196 aa
PF03725
RNase_PH_C 199-261 aa
PF03726
PNPase 294-374 aa
PF01138
RNase_PH 377-510 aa
PF00575
S1 680-751 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769301.1 |
Pfam | PF01138 |
RNase_PH | Domain | 67 | 196 | 8.5e-57 | 191.9 | 3' exoribonuclease family, domain 1 |
XP_057769301.1 |
Pfam | PF03725 |
RNase_PH_C | Domain | 199 | 261 | 1.4e-15 | 57.7 | 3' exoribonuclease family, domain 2 |
XP_057769301.1 |
Pfam | PF03726 |
PNPase | Domain | 294 | 374 | 1.7e-14 | 54.8 | Polyribonucleotide nucleotidyltransferase, RNA binding domain |
XP_057769301.1 |
Pfam | PF01138 |
RNase_PH | Domain | 377 | 510 | 8.5e-57 | 191.9 | 3' exoribonuclease family, domain 1 |
XP_057769301.1 |
Pfam | PF00575 |
S1 | Domain | 680 | 751 | 1e-15 | 58.5 | S1 RNA binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。