Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002565`

染色体: Chr06 坐标: 36846941-36855714 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002565`
名称	SmilChr06G002565
描述	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	36846941 - 36855714 / `-`

ID 对照

NCBI Gene ID	`LOC130989361`
GeneID	`130989361`
locus_tag	`-`
NCBI Name	`LOC130989361`
原始查询	`SmilChr06G002565`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic
产物	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2%2C chloroplastic
Arabidopsis	`AT5G52110` (HCF208) chaperone (DUF2930) [Source:NCBI gene (formerly Entrezgene);Acc:835287] identity=55.2; qcov=0.827; evalue=7.24e-90; confidence=high
Rice	`Os10g0522500` - identity=65.6; qcov=0.422; evalue=5.61e-49; confidence=low
GO	GO:0010190 (cytochrome b6f complex assembly)
KEGG	-
Pfam	PF11152 (CCB2_CCB4)
InterPro	-
eggNOG	-
NR	GeneID:130989361

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057769305.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057769305.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057769305.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057769305.1`
5	Nucleus	细胞核	0.00000	`XP_057769305.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:36847631`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B24,B69,B96
`Chr6:36848388`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B52,B72,C16,C24,D4
`Chr6:36848451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,A22,B104,B71,C81
`Chr6:36848486`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr6:36850210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:36850211`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:36850218`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr6:36850231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C17,C65
`Chr6:36850324`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C51,C74
`Chr6:36850490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A23,B131,B83,C59,D10
`Chr6:36850491`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr6:36850498`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769305.1

290 aa

145

290

CCB2_CCB4

PF11152 CCB2_CCB4 65-281 aa

XP_057769306.1

290 aa

145

290

CCB2_CCB4

PF11152 CCB2_CCB4 65-281 aa

XP_057769307.1

290 aa

145

290

CCB2_CCB4

PF11152 CCB2_CCB4 65-281 aa

XP_057769308.1

289 aa

144

289

CCB2_CCB4

PF11152 CCB2_CCB4 65-281 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769305.1`	Pfam	`PF11152`	CCB2_CCB4	Family	65	281	1.2e-52	178.8	Cofactor assembly of complex C subunit B, CCB2/CCB4
`XP_057769306.1`	Pfam	`PF11152`	CCB2_CCB4	Family	65	281	1.2e-52	178.8	Cofactor assembly of complex C subunit B, CCB2/CCB4
`XP_057769307.1`	Pfam	`PF11152`	CCB2_CCB4	Family	65	281	1.2e-52	178.8	Cofactor assembly of complex C subunit B, CCB2/CCB4
`XP_057769308.1`	Pfam	`PF11152`	CCB2_CCB4	Family	65	281	1.2e-52	178.8	Cofactor assembly of complex C subunit B, CCB2/CCB4

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

12 records

下载 cDNA FASTA

XR_009090583.1
GGACTACATTCATCCACAATACCCTATTCTTCCATTATAATCTACATCATTTTCACCTCTCACATTCATCAACCACCTCTCTCGCAGCCAAGCTCTCGCAGCCAAGCTAAGAACCAATATCATCAGCCACACCACCAAGGTCCAGGCGGGAAGTGATAGCTAAAGAGGGAAGTAACTCTACGCCCGTTGTGGGAACGAATAAGAAGCAAAAAAATGAGTAGCTGTGGCACTTTCTCCCTCTCTCTGAATCCATTAATTAT...

XR_009090578.1
TCATTTTCACCTCTCACATTCATCAACCACCTCTCTCGCAGCCAAGCTCTCGCAGCCAAGCTAAGAACCAATATCATCAGCCACACCACCAAGGTCCAGGCGGGAAGTGATAGCTAAAGAGGGAAGTAACTCTACGCCCGTTGTGGGAACGAATAAGAAGCAAAAAAATGAGTAGCTGTGGCACTTTCTCCCTCTCTCTGAATCCATTAATTATTCACAAAGGCAACCACCCTTCAAAGTTAACCATTAGCAGACCATCA...

CDS

4 records

下载 CDS FASTA

LOC130989361
ATGAGTAGCTGTGGCACTTTCTCCCTCTCTCTGAATCCATTAATTATTCACAAAGGCAACCACCCTTCAAAGTTAACCATTAGCAGACCATCATCACCGCCCGCTAAAATCTGTTGCTCCCAGAATCAACAACAGCCTAATCTCTCAGTTCTTCTCTTCACTCTTGGAATACCTGGATTGGACGAATCTTACTTGCCCAGATACATAGGATATGGATTTGGGGCGCTCTTAGTGTTAAATCATTTTCTGGGCTCCGATTC...

Protein

4 records

下载 Protein FASTA

XP_057769305.1
MSSCGTFSLSLNPLIIHKGNHPSKLTISRPSSPPAKICCSQNQQQPNLSVLLFTLGIPGLDESYLPRYIGYGFGALLVLNHFLGSDSSSITPAQLRTEALGLSLASFSAVVPYLGKFLKGATPTTQKNIPEGVEQIFVMSQDIAADLKEDLAWGTYVLLRNTNSISVLISVEDAICVRGYWSMPKDLSKDSIPDWFRKQTQRIGLSELKDAMYLQQSADSELKEMVPVGTRSLLVQPIREACELSSSQTGTRKGFILLAS...

XP_057769306.1
MSSCGTFSLSLNPLIIHKGNHPSKLTISRPSSPPAKICCSQNQQQPNLSVLLFTLGIPGLDESYLPRYIGYGFGALLVLNHFLGSDSSSITPAQLRTEALGLSLASFSAVVPYLGKFLKGATPTTQKNIPEGVEQIFVMSQDIAADLKEDLAWGTYVLLRNTNSISVLISVEDAICVRGYWSMPKDLSKDSIPDWFRKQTQRIGLSELKDAMYLQQSADSELKEMVPVGTRSLLVQPIREACELSSSQTGTRKGFILLAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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