Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002568`

染色体: Chr06 坐标: 36875920-36878992 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002568`
名称	SmilChr06G002568
描述	bifunctional protein FolD 2-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	36875920 - 36878992 / `-`

ID 对照

NCBI Gene ID	`LOC130989363`
GeneID	`130989363`
locus_tag	`-`
NCBI Name	`LOC130989363`
原始查询	`SmilChr06G002568`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bifunctional protein FolD 2-like
产物	bifunctional protein FolD 2-like
Arabidopsis	`AT3G12290` (AT3G12290) Amino acid dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820409] identity=82.8; qcov=0.988; evalue=1.9e-142; confidence=high
Rice	`Os05g0150800` - identity=81.4; qcov=0.983; evalue=9.7e-143; confidence=high
GO	GO:0004477 (methenyltetrahydrofolate cyclohydrolase activity); GO:0004488 (methylenetetrahydrofolate dehydrogenase (NADP+) activity); GO:0005829 (cytosol); GO:0035999 (tetrahydrofolate interconversion)
KEGG	-
Pfam	PF00763 (THF_DHG_CYH); PF02882 (THF_DHG_CYH_C)
InterPro	-
eggNOG	-
NR	GeneID:130989363

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057769309.1`
2	Cytoplasm	细胞质	0.80000	`XP_057769309.1`
3	Mitochondrion	线粒体	0.40000	`XP_057769310.1`
4	Nucleus	细胞核	0.00000	`XP_057769309.1`
5	Chromosome	染色体	0.00000	`XP_057769309.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:36877056`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B62,B85,B94
`Chr6:36877935`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B28,C87,D5
`Chr6:36877941`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C45,C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769309.1

296 aa

148

296

THF_DHG_CYH

THF_DHG_CYH_C

PF00763 THF_DHG_CYH 9-124 aa PF02882 THF_DHG_CYH_C 145-292 aa

XP_057769310.1

241 aa

120

241

THF_DHG_CYH

THF_DHG_CYH_C

PF00763 THF_DHG_CYH 1-69 aa PF02882 THF_DHG_CYH_C 90-237 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769309.1`	Pfam	`PF00763`	THF_DHG_CYH	Domain	9	124	2.7e-42	144.4	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
`XP_057769309.1`	Pfam	`PF02882`	THF_DHG_CYH_C	Domain	145	292	1.3e-58	197.4	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
`XP_057769310.1`	Pfam	`PF00763`	THF_DHG_CYH	Domain	1	69	1.2e-24	87.4	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
`XP_057769310.1`	Pfam	`PF02882`	THF_DHG_CYH_C	Domain	90	237	5.6e-59	198.5	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913326.1
CGAACCCTAACATTTGCGAGCGCCGCTGCTGCTCCTTCTCTTTCTCCTTCTTTTCCACACTATTTATCTTCCACTGCAGTCCCCATTTTATTGTGTTAATTTGGCTGAAGAAAATATATTCTCTTCCTACAATAATATTGTCGTGTTCTTCCTTAGAGTTACGAAATCAATTACAAAATCGAAATCGCTGTGACGACTCGGAAAATTCAAGCTCAACAGACCGGATTGCAGACTACACTACACAATCACGAATCACCGTT...

XM_057913327.1
AATCTAGCTGCAAATCTCTGTCAACCCACAACCATGTCGGATCACAAGGTCACTATAATCGACGGCAAAGCAGTCGCCCAAACAATCCGATCGGAGATCGCCGCCGAAGTCTGCCGCCTCTCCGAAACGTACGGCAAGGTTTTTGGAGTTGATTTCAGGTTCCTGGTCTAGCTGTTGTGATTGTGGGGCAAAGGAAGGATTCACAGAGCTATGTGAATATGAAAAGGAAAGCTTGTGCAGAAGTTGGAATCAAGTCGATT...

CDS

2 records

下载 CDS FASTA

LOC130989363
ATGTCGGATCACAAGGTCACTATAATCGACGGCAAAGCAGTCGCCCAAACAATCCGATCGGAGATCGCCGCCGAAGTCTGCCGCCTCTCCGAAACGTACGGCAAGGTTCCTGGTCTAGCTGTTGTGATTGTGGGGCAAAGGAAGGATTCACAGAGCTATGTGAATATGAAAAGGAAAGCTTGTGCAGAAGTTGGAATCAAGTCGATTGATTTGGACCTACCAGAGAATGTATCCGAATCTGAATTGATTAGCAAAGTTCA...

LOC130989363
ATGAAAAGGAAAGCTTGTGCAGAAGTTGGAATCAAGTCGATTGATTTGGACCTACCAGAGAATGTATCCGAATCTGAATTGATTAGCAAAGTTCATGAACTGAATGTAAATCCTGATGTTCATGGTATACTGGTTCAGCTCCCGTTGCCTAAACATATAAACGAAGAGAAAATTTTAACTGAGATATCTCTGGGAAAGGATGTGGATGGATTTCACCCTCTGAACATTGGTAAATTAGCAATGAAAGGCAGAGATCCTCT...

Protein

2 records

下载 Protein FASTA

XP_057769309.1
MSDHKVTIIDGKAVAQTIRSEIAAEVCRLSETYGKVPGLAVVIVGQRKDSQSYVNMKRKACAEVGIKSIDLDLPENVSESELISKVHELNVNPDVHGILVQLPLPKHINEEKILTEISLGKDVDGFHPLNIGKLAMKGRDPLFVPCTPKGCIELLTRHGITIKGKNAVVVGRSNIVGLPVSLLLLKEDATVTIVHSRTKEPESIVRNADIIIAAAGQAAMIKGSWIKPGAAVIDVGTNAVDDPSKKSGYRLVGDVDFQEA...

XP_057769310.1
MKRKACAEVGIKSIDLDLPENVSESELISKVHELNVNPDVHGILVQLPLPKHINEEKILTEISLGKDVDGFHPLNIGKLAMKGRDPLFVPCTPKGCIELLTRHGITIKGKNAVVVGRSNIVGLPVSLLLLKEDATVTIVHSRTKEPESIVRNADIIIAAAGQAAMIKGSWIKPGAAVIDVGTNAVDDPSKKSGYRLVGDVDFQEACKTAGCITKVPGGVGPMTVAMLLKNTLDGAKRVIEG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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