当前解析结果
SmilChr06G002589| 统一新 Gene ID | SmilChr06G002589 |
|---|---|
| 名称 | SmilChr06G002589 |
| 描述 | uncharacterized SmilChr06G002589 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 37093838 - 37096342 / - |
| NCBI Gene ID | LOC130989422 |
|---|---|
| GeneID | 130989422 |
| locus_tag | - |
| NCBI Name | LOC130989422 |
| 原始查询 | SmilChr06G002589 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | myb domain protein 118 [Source:NCBI gene (formerly Entrezgene);Acc:822399]; symbol=MYB118; hit=AT3G27785; species=arabidopsis; confidence=medium |
| 产物 | myb domain protein 118 [Source:NCBI gene (formerly Entrezgene);Acc:822399]; symbol=MYB118; hit=AT3G27785; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G27785 (MYB118)myb domain protein 118 [Source:NCBI gene (formerly Entrezgene);Acc:822399] identity=62.8; qcov=0.459; evalue=1.06e-60; confidence=medium |
| Rice | Os06g0162700- identity=60.1; qcov=0.479; evalue=1.24e-56; confidence=medium |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989422 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769407.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057769407.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057769407.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057769407.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057769407.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:37093973 |
G |
GGC |
2bp_insertion | frameshift_variant | 58 | A10,A4,B1,B105,B110,B111,B117,B127,B128,B131,B135,B2,B25,B27,B3,B38,B39,B4,B40,B42,B43,B44,B50,B51,B58,B60,B68,B70,B87,C14,C27,C28,C31,C33,C4,C44,C5,C54,C55,C56,C57,C6,C60,C62,C65,C69,C70,C72,C73,C76,C78,C8,C83,D1,D10,D2,D5,D9 |
Chr6:37093996 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr6:37095634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr6:37095641 |
T |
TA |
1bp_insertion | frameshift_variant | 9 | A11,A14,A20,B103,B111,B51,B65,B93,C1 |
Chr6:37095664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,B7 |
Chr6:37095702 |
A |
AC |
1bp_insertion | frameshift_variant | 22 | A11,A7,B10,B104,B115,B117,B121,B122,B123,B132,B21,B31,B54,B6,B85,B93,C1,C41,C51,C58,C67,C9 |
Chr6:37095867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr6:37095869 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | C59 |
Chr6:37095869 |
CT |
C |
1bp_deletion | CDS_variant | 1 | C59 |
Chr6:37095998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C36,C53,C67 |
Chr6:37096005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C36,C53 |
Chr6:37096006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C36,C53,C67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769407.1PF00249
Myb_DNA-binding 163-209 aa
PF13921
Myb_DNA-bind_6 166-223 aa
PF00249
Myb_DNA-binding 215-257 aa
PF13921
Myb_DNA-bind_6 218-260 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769407.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 163 | 209 | 1.8e-38 | 131.1 | Myb-like DNA-binding domain |
XP_057769407.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 166 | 223 | 2.9e-29 | 101.7 | Myb-like DNA-binding domain |
XP_057769407.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 215 | 257 | 1.8e-38 | 131.1 | Myb-like DNA-binding domain |
XP_057769407.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 218 | 260 | 2.9e-29 | 101.7 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。