Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002590`

染色体: Chr06 坐标: 37100605-37105933 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002590`
名称	SmilChr06G002590
描述	ATP-dependent RNA helicase-like protein DB10
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	37100605 - 37105933 / `-`

ID 对照

NCBI Gene ID	`LOC130989384`
GeneID	`130989384`
locus_tag	`-`
NCBI Name	`LOC130989384`
原始查询	`SmilChr06G002590`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent RNA helicase-like protein DB10
产物	ATP-dependent RNA helicase-like protein DB10
Arabidopsis	`AT5G14610` (AT5G14610) DEAD box RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831313] identity=70.4; qcov=0.812; evalue=0; confidence=high
Rice	`Os01g0172200` (OsRH14) - identity=60.7; qcov=0.875; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:1990904 (ribonucleoprotein complex)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF00397 (WW); PF04851 (ResIII)
InterPro	-
eggNOG	-
NR	GeneID:130989384

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769331.1`
2	Nuclear speckle	核斑点	0.20000	`XP_057769331.1`
3	Nucleoplasm	核质	0.20000	`XP_057769331.1`
4	Cytoplasm	细胞质	0.20000	`XP_057769331.1`
5	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057769331.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:37101090`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr6:37101209`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A10,A14,A20,B103,B51
`Chr6:37101350`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A10,A14,A20,B103,B51
`Chr6:37102096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B62,B85,B94
`Chr6:37103191`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr6:37104441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr6:37104475`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B118
`Chr6:37104475`	`GA`	`G`	1bp_deletion	CDS_variant	1	B118
`Chr6:37104980`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769331.1

690 aa

345

690

DEAD

ResIII

Helicase_C

PF00397 WW 17-47 aa PF00270 DEAD 180-349 aa PF04851 ResIII 194-343 aa PF00271 Helicase_C 387-495 aa

XP_057769332.1

686 aa

343

686

DEAD

ResIII

Helicase_C

PF00397 WW 17-47 aa PF00270 DEAD 176-345 aa PF04851 ResIII 190-339 aa PF00271 Helicase_C 383-491 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769331.1`	Pfam	`PF00397`	WW	Domain	17	47	3.4e-08	34.1	WW domain
`XP_057769331.1`	Pfam	`PF00270`	DEAD	Domain	180	349	5.3e-52	176.6	DEAD/DEAH box helicase
`XP_057769331.1`	Pfam	`PF04851`	ResIII	Family	194	343	3.5e-08	34.2	Type III restriction enzyme, res subunit
`XP_057769331.1`	Pfam	`PF00271`	Helicase_C	Domain	387	495	5.1e-36	124.0	Helicase conserved C-terminal domain
`XP_057769332.1`	Pfam	`PF00397`	WW	Domain	17	47	3.3e-08	34.1	WW domain
`XP_057769332.1`	Pfam	`PF00270`	DEAD	Domain	176	345	5.3e-52	176.6	DEAD/DEAH box helicase
`XP_057769332.1`	Pfam	`PF04851`	ResIII	Family	190	339	3.5e-08	34.2	Type III restriction enzyme, res subunit
`XP_057769332.1`	Pfam	`PF00271`	Helicase_C	Domain	383	491	5.1e-36	124.0	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913348.1
AAAGTCAAAAATAAAATTAATACCGATACAGCAAAGCCTTCTTTTTCCCTATAAGTAACCTCTCTCCTCTCACCCTTTTTCTCTTCGCCCACCTACGCTTCTGGTTTTTCGGAAGCGTAGATCCCTCCATTTCTCTATCTAATCCACGCGCGCACCTATTTGTGAATCACTGAGAGAGAGAGAAGAGAGATAGATAGAGAGAGAGGCGGTGTGGAACAGAAGAGCTTTTCTGTTTCGTTATTCTGAAAAAGACGCGCGGT...

XM_057913349.1
CGATACAGCAAAGCCTTCTTTTTCCCTATAAGTAACCTCTCTCCTCTCACCCTTTTTCTCTTCGCCCACCTACGCTTCTGGTTTTTCGGAAGCGTAGATCCCTCCATTTCTCTATCTAATCCACGCGCGCACCTATTTGTGAATCACTGAGAGAGAGAGAAGAGAGATAGATAGAGAGAGAGGCGGTGTGGAACAGAAGAGCTTTTCTGTTTCGTTATTCTGAAAAAGACGCGCGGTACTCAATAGGGAAGCTTTGATAT...

CDS

2 records

下载 CDS FASTA

LOC130989384
ATGGCAGCTGCTGCAGCTGGTATTAGTTATGCACCTGAGGACCCTGCGCTCCCAAAACCATGGAAGGGTCTGGTTGATGATAAGACTGGATATGTTTACTATTGGAACCCTGAGACCAATATAACTCAATACGACAAACCTGTTGCCCCTGGTCACACAAGCTATGCGCCAGTTCATAAATCTTTGAGTTCATCGGTTCAGAAGTCCCCCCAAGGACGATATAATGCGAATGATAATAATGACAGATATTCCACAGCTAG...

Protein

2 records

下载 Protein FASTA

XP_057769331.1
MAAAAAGISYAPEDPALPKPWKGLVDDKTGYVYYWNPETNITQYDKPVAPGHTSYAPVHKSLSSSVQKSPQGRYNANDNNDRYSTASNGSAKASVPVTYQATRGRSDYSQSDVEVKASVGYGPHPSNGADSIVSAEAYRRRHEISVTGDNVPQPFTSFEATGFAPEILREVQHAGFSAPTPIQAQSWPIAIKGRDIVAIAKTGSGKTLGYLIPGFIHLKQRRNNPKLGPTVLVLSPTRELATQIQEEAVKFGRSSKISCT...

XP_057769332.1
MAAAAAGISYAPEDPALPKPWKGLVDDKTGYVYYWNPETNITQYDKPVAPGHTSYAPVHKSLSSSVQKSPQGRYNANDNNDRYSTASNGSAKASVPATRGRSDYSQSDVEVKASVGYGPHPSNGADSIVSAEAYRRRHEISVTGDNVPQPFTSFEATGFAPEILREVQHAGFSAPTPIQAQSWPIAIKGRDIVAIAKTGSGKTLGYLIPGFIHLKQRRNNPKLGPTVLVLSPTRELATQIQEEAVKFGRSSKISCTCLYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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