Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002597`

染色体: Chr06 坐标: 37230740-37238413 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002597`
名称	SmilChr06G002597
描述	26S proteasome regulatory subunit 6A homolog
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	37230740 - 37238413 / `+`

ID 对照

NCBI Gene ID	`LOC130989408`
GeneID	`130989408`
locus_tag	`-`
NCBI Name	`LOC130989408`
原始查询	`SmilChr06G002597`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	26S proteasome regulatory subunit 6A homolog
产物	26S proteasome regulatory subunit 6A homolog
Arabidopsis	`AT3G05530` (RPT5A) regulatory particle triple-A ATPase 5A [Source:NCBI gene (formerly Entrezgene);Acc:819718] identity=92.6; qcov=1; evalue=0; confidence=high
Rice	`Os06g0173100` (OsRpt5b) - identity=94.9; qcov=0.956; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0008540 (proteasome regulatory particle, base subcomplex); GO:0016887 (ATP hydrolysis activity); GO:0036402 (proteasome-activating activity); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00004 (AAA); PF07728 (AAA_5); PF16450 (Prot_ATP_ID_OB_C); PF17862 (AAA_lid_3); PF20720 (nSTAND3)
InterPro	-
eggNOG	-
NR	GeneID:130989408

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769381.1`
2	Cytoplasm	细胞质	1.00000	`XP_057769382.1`
3	Cytosol	细胞质基质	0.60000	`XP_057769381.1`
4	Chromosome	染色体	0.00000	`XP_057769381.1`
5	Centromere	着丝粒	0.00000	`XP_057769381.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:37232366`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B107,B64,B66,B98,D10
`Chr6:37233132`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B41,B44,C34,C40
`Chr6:37235467`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:37237323`	`T`	`TA`	1bp_insertion	frameshift_variant	4	B107,B64,B66,B98
`Chr6:37237323`	`T`	`TA`	1bp_insertion	CDS_variant	4	B107,B64,B66,B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769381.1

422 aa

211

422

Prot_ATP_ID_OB_C

AAA_5

AAA

nSTAND3

AAA_lid_3

PF16450 Prot_ATP_ID_OB_C 72-148 aa PF07728 AAA_5 205-325 aa PF00004 AAA 206-338 aa PF20720 nSTAND3 206-353 aa PF17862 AAA_lid_3 361-405 aa

XP_057769382.1

366 aa

183

366

Prot_ATP_ID_OB_C

AAA_5

AAA

nSTAND3

PF16450 Prot_ATP_ID_OB_C 72-148 aa PF07728 AAA_5 205-325 aa PF00004 AAA 206-338 aa PF20720 nSTAND3 206-352 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769381.1`	Pfam	`PF16450`	Prot_ATP_ID_OB_C	Domain	72	148	4.2e-10	40.0	Proteasomal ATPase OB C-terminal domain
`XP_057769381.1`	Pfam	`PF07728`	AAA_5	Domain	205	325	5.4e-07	30.4	AAA domain (dynein-related subfamily)
`XP_057769381.1`	Pfam	`PF00004`	AAA	Domain	206	338	3e-44	151.4	ATPase family associated with various cellular activities (AAA)
`XP_057769381.1`	Pfam	`PF20720`	nSTAND3	Domain	206	353	2.8e-07	31.1	Novel STAND NTPase 3
`XP_057769381.1`	Pfam	`PF17862`	AAA_lid_3	Domain	361	405	2.7e-15	56.3	AAA+ lid domain
`XP_057769382.1`	Pfam	`PF16450`	Prot_ATP_ID_OB_C	Domain	72	148	3.3e-10	40.4	Proteasomal ATPase OB C-terminal domain
`XP_057769382.1`	Pfam	`PF07728`	AAA_5	Domain	205	325	4.7e-07	30.6	AAA domain (dynein-related subfamily)
`XP_057769382.1`	Pfam	`PF00004`	AAA	Domain	206	338	2.5e-44	151.6	ATPase family associated with various cellular activities (AAA)
`XP_057769382.1`	Pfam	`PF20720`	nSTAND3	Domain	206	352	2.4e-07	31.3	Novel STAND NTPase 3

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009090598.1
CGCGGATGAACGGACAAGTGGAAGTGACGAACATAATAAAACAGAGGAAGATATTCAATATCAAAAATGGGCAACTCAATGGGCCGTTAAATGAAACATTTTCGGGCCCATATCTATATACCATTCCCCTTCCCCAAGCAAGCCATTTTAATACCCTTTCGCTCCCCCACCCTCCCTCTCCCTCTCTTCCCCCACATCACACACCCGACTTAGCGACCTTGAAGCATAGTTGGTCGGTATGGCGACGCCGATGGTGGAGG...

XM_057913398.1
AGGACGTACTACTAGTACAGTTCTAATGTGAGAGCATAAATACGATGGTAAAGATTTGTGTCCGTTGTGCAGTCGCGGATGAACGGACAAGTGGAAGTGACGAACATAATAAAACAGAGGAAGATATTCAATATCAAAAATGGGCAACTCAATGGGCCGTTAAATGAAACATTTTCGGGCCCATATCTATATACCATTCCCCTTCCCCAAGCAAGCCATTTTAATACCCTTTCGCTCCCCCACCCTCCCTCTCCCTCTCT...

CDS

2 records

下载 CDS FASTA

LOC130989408
ATGGCGACGCCGATGGTGGAGGACAACTTCGAGGACGACCAGCTCTCCTCCATGACCACCGAGGACATTACTCGCGCCTCTCGTCTTCTTGATAACGAAATCCGTATTCTCAAGGAAGAGTTACAGAGGACGAATCTGGAGTTGGATTCGTTCCGCGAGAAGATAAAAGAGAATCAGGAAAAAATCAAGCTGAATAAGCAGCTTCCTTACTTGGTCGGAAACATTGTAGAGATATTGGAAATGAACCCAGAGGAAGAAGC...

Protein

2 records

下载 Protein FASTA

XP_057769381.1
MATPMVEDNFEDDQLSSMTTEDITRASRLLDNEIRILKEELQRTNLELDSFREKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE...

XP_057769382.1
MATPMVEDNFEDDQLSSMTTEDITRASRLLDNEIRILKEELQRTNLELDSFREKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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