当前解析结果
SmilChr06G002600| 统一新 Gene ID | SmilChr06G002600 |
|---|---|
| 名称 | SmilChr06G002600 |
| 描述 | putative F-box/LRR-repeat protein 23 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 37367679 - 37369184 / - |
| NCBI Gene ID | LOC130990861 |
|---|---|
| GeneID | 130990861 |
| locus_tag | - |
| NCBI Name | LOC130990861 |
| 原始查询 | SmilChr06G002600 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative F-box/LRR-repeat protein 23 |
| 产物 | putative F-box/LRR-repeat protein 23 |
| Arabidopsis | AT4G05460 (AT4G05460)RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825896] identity=41.3; qcov=1.01; evalue=3.91e-59; confidence=medium |
| Rice | Os02g0317300 (OsFbox086)- identity=33.9; qcov=0.827; evalue=2.11e-37; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990861 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771072.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057771072.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057771072.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057771072.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057771072.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:37367700 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,B38,B39,C2 |
Chr6:37367715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B49,C6 |
Chr6:37367736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr6:37367763 |
A |
AAT |
2bp_insertion | frameshift_variant | 1 | B59 |
Chr6:37367763 |
A |
AAT |
2bp_insertion | CDS_variant | 1 | B59 |
Chr6:37367815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B135,B56,B63,C77 |
Chr6:37367861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr6:37367870 |
G |
A |
EMS_canonical_SNV | stop_gained | 18 | A7,B124,B130,B135,B23,B38,B44,B5,B60,B66,B73,B85,B9,C3,C32,C47,C68,C77 |
Chr6:37367916 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:37367925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B52,C2,C29,C7 |
Chr6:37368010 |
TGA |
T |
2bp_deletion | frameshift_variant | 73 | A1,A11,A15,A3,A4,A7,A9,B109,B112,B114,B119,B120,B121,B129,B132,B135,B136,B139,B2,B23,B24,B29,B3,B31,B33,B35,B40,B42,B43,B44,B56,B59,B60,B61,B63,B65,B66,B67,B70,B73,B76,B79,B81,B82,B85,B86,B9,B93,C11,C15,C19,C24,C25,C27,C3,C31,C32,C41,C45,C47,C48,C55,C6,C60,C61,C68,C69,C7,C77,C82,C86,D4,D5 |
Chr6:37368013 |
T |
TCA |
2bp_insertion | frameshift_variant | 71 | A1,A11,A15,A3,A4,A7,A9,B109,B112,B114,B119,B120,B121,B129,B132,B135,B136,B139,B2,B23,B24,B29,B3,B31,B33,B35,B40,B42,B43,B44,B56,B60,B61,B63,B65,B66,B67,B70,B73,B76,B79,B81,B82,B85,B86,B93,C11,C15,C19,C24,C25,C27,C3,C31,C32,C41,C45,C47,C48,C55,C6,C60,C61,C68,C69,C7,C77,C82,C86,D4,D5 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。