当前解析结果
SmilChr06G002617| 统一新 Gene ID | SmilChr06G002617 |
|---|---|
| 名称 | SmilChr06G002617 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 37640347 - 37641009 / - |
| NCBI Gene ID | LOC130990869 |
|---|---|
| GeneID | 130990869 |
| locus_tag | - |
| NCBI Name | LOC130990869 |
| 原始查询 | SmilChr06G002617 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=38.4; qcov=0.923; evalue=2.03e-45; confidence=medium |
| Rice | Os11g0656500- identity=50.7; qcov=0.977; evalue=1.13e-69; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990869 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771081.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057771081.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057771081.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057771081.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057771081.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:37640352 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | D2 |
Chr6:37640352 |
A |
AT |
1bp_insertion | CDS_variant | 1 | D2 |
Chr6:37640372 |
ACC |
A |
2bp_deletion | frameshift_variant | 2 | D2,D9 |
Chr6:37640372 |
ACC |
A |
2bp_deletion | CDS_variant | 2 | D2,D9 |
Chr6:37640376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B34,C80 |
Chr6:37640380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B29,B45,C73,D2,D9 |
Chr6:37640384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B47,B78,C33,C61,C72 |
Chr6:37640390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D2,D9 |
Chr6:37640394 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D2,D9 |
Chr6:37640401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,B26,B88,C26,C42 |
Chr6:37640404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D2,D9 |
Chr6:37640406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B34,B86,C17 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。