Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002627`

染色体: Chr06 坐标: 37845366-37850023 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002627`
名称	SmilChr06G002627
描述	L-aspartate oxidase 2-a, chloroplastic-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	37845366 - 37850023 / `+`

ID 对照

NCBI Gene ID	`LOC130989390`
GeneID	`130989390`
locus_tag	`-`
NCBI Name	`LOC130989390`
原始查询	`SmilChr06G002627`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	L-aspartate oxidase 2-a, chloroplastic-like
产物	L-aspartate oxidase 2-a%2C chloroplastic-like
Arabidopsis	`AT5G14760` (AO) L-aspartate oxidase [Source:NCBI gene (formerly Entrezgene);Acc:831328] identity=76.3; qcov=1; evalue=0; confidence=high
Rice	`Os02g0134400` (OsLASPO) - identity=77.4; qcov=0.888; evalue=0; confidence=high
GO	GO:0008734 (L-aspartate oxidase activity); GO:0009435 (NAD+ biosynthetic process)
KEGG	smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil00760 (Nicotinate and nicotinamide metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00890 (FAD_binding_2); PF01266 (DAO); PF02910 (Succ_DH_flav_C)
InterPro	-
eggNOG	-
NR	GeneID:130989390

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057769349.1`
2	Chloroplast	叶绿体	0.60000	`XP_057769349.1`
3	Mitochondrion matrix	线粒体基质	0.20000	`XP_057769349.1`
4	Nucleus	细胞核	0.00000	`XP_057769349.1`
5	Chromosome	染色体	0.00000	`XP_057769349.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:37846885`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B135,C15
`Chr6:37847627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr6:37849081`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769349.1

643 aa

322

643

DAO

FAD_binding_2

Succ_DH_flav_C

PF01266 DAO 89-202 aa PF00890 FAD_binding_2 89-473 aa PF02910 Succ_DH_flav_C 529-615 aa

XP_057769350.1

643 aa

322

643

DAO

FAD_binding_2

Succ_DH_flav_C

PF01266 DAO 89-202 aa PF00890 FAD_binding_2 89-473 aa PF02910 Succ_DH_flav_C 529-615 aa

XP_057769351.1

643 aa

322

643

DAO

FAD_binding_2

Succ_DH_flav_C

PF01266 DAO 89-202 aa PF00890 FAD_binding_2 89-473 aa PF02910 Succ_DH_flav_C 529-615 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769349.1`	Pfam	`PF01266`	DAO	Domain	89	202	1.9e-07	31.7	FAD dependent oxidoreductase
`XP_057769349.1`	Pfam	`PF00890`	FAD_binding_2	Domain	89	473	8.4e-91	305.9	FAD binding domain
`XP_057769349.1`	Pfam	`PF02910`	Succ_DH_flav_C	Domain	529	615	2.9e-16	60.3	Fumarate reductase flavoprotein C-term
`XP_057769350.1`	Pfam	`PF01266`	DAO	Domain	89	202	1.9e-07	31.7	FAD dependent oxidoreductase
`XP_057769350.1`	Pfam	`PF00890`	FAD_binding_2	Domain	89	473	8.4e-91	305.9	FAD binding domain
`XP_057769350.1`	Pfam	`PF02910`	Succ_DH_flav_C	Domain	529	615	2.9e-16	60.3	Fumarate reductase flavoprotein C-term
`XP_057769351.1`	Pfam	`PF01266`	DAO	Domain	89	202	1.9e-07	31.7	FAD dependent oxidoreductase
`XP_057769351.1`	Pfam	`PF00890`	FAD_binding_2	Domain	89	473	8.4e-91	305.9	FAD binding domain
`XP_057769351.1`	Pfam	`PF02910`	Succ_DH_flav_C	Domain	529	615	2.9e-16	60.3	Fumarate reductase flavoprotein C-term

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057913368.1
GAGATAAAAATAAAAAATAGAGAGAGAGAGAGCAGCAGCGAAGTTACAAGTGTAGGGATTAATGGCGCGAAGTTCAATGAAGCTTCTTCAATCTTGAACTATTGCACACACACACGCACTCAGCTGTGGCGCCTCGGAACTGTCGGCCCCTCCATTTCCATCTCCTTTTTTTTGCTTTTTCCTCTGCTGCGGTTTCCATTTCTTTTTTAATACGCATGTATGCGCAGATCGTTGTGGATAGATATTGAGATACACAGATT...

XM_057913367.1
GAGATAAAAATAAAAAATAGAGAGAGAGAGAGCAGCAGCGAAGTTACAAGTGTAGGGATTAATGGCGCGAAGTTCAATGAAGCTTCTTCAATCTTGAACTATTGCACACACACACGCACTCAGCTGTGGCGCCTCGGAACTATCGTTGTGGATAGATATTGAGATACACAGATTGTTCGGAATTCGCGCTTCTTCGCTCCGGATTCTTCACTGATTTGCTGAGGAATTCAGGCGCACACCTCGAATCTCATCCTCATTTT...

CDS

3 records

下载 CDS FASTA

LOC130989390
ATGGCTACAAGTGTAGCTTCCGGGAGCGGTCAGCTACATTTTCAAGAGGCCTTTTTCAGGGGACATGGCAGCAGACGGGCTTATTCTGTTCGCAATTTAGCCGTGCCCTTGTGCATGCAGAAGGAGCTTTCTTGGTGTCGTGGGGTGTCTAAAGGCTTGCGGATTAACAAAATCAATTATTTCCATCCTCATATCAAGGAAGATTGCAAGCAAAGCAGAGCAGTGATCAGATCGTACCTGAGAGAGAGTCATAATAAGTA...

Protein

3 records

下载 Protein FASTA

XP_057769349.1
MATSVASGSGQLHFQEAFFRGHGSRRAYSVRNLAVPLCMQKELSWCRGVSKGLRINKINYFHPHIKEDCKQSRAVIRSYLRESHNKYFDFAVIGSGVAGLRYALEVAKLGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMRDTIVAGAYLCDEETVRVVCTEGPERIRELIAMGASFDHGEDGNLHLAREGGHSHCRIVHAADMTGREIERALLEAVRKDPNIFVFEHHFAIDLLTSQDGSDTVCLGVDTLNTE...

XP_057769350.1
MATSVASGSGQLHFQEAFFRGHGSRRAYSVRNLAVPLCMQKELSWCRGVSKGLRINKINYFHPHIKEDCKQSRAVIRSYLRESHNKYFDFAVIGSGVAGLRYALEVAKLGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMRDTIVAGAYLCDEETVRVVCTEGPERIRELIAMGASFDHGEDGNLHLAREGGHSHCRIVHAADMTGREIERALLEAVRKDPNIFVFEHHFAIDLLTSQDGSDTVCLGVDTLNTE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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