当前解析结果
SmilChr06G002643| 统一新 Gene ID | SmilChr06G002643 |
|---|---|
| 名称 | SmilChr06G002643 |
| 描述 | probable phospholipid-transporting ATPase 8 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 38208045 - 38214700 / + |
| NCBI Gene ID | LOC130989373 |
|---|---|
| GeneID | 130989373 |
| locus_tag | - |
| NCBI Name | LOC130989373 |
| 原始查询 | SmilChr06G002643 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable phospholipid-transporting ATPase 8 |
| 产物 | probable phospholipid-transporting ATPase 8 |
| Arabidopsis | AT3G27870 (AT3G27870)ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822407] identity=70.8; qcov=0.987; evalue=0; confidence=high |
| Rice | Os06g0565900- identity=52.3; qcov=0.536; evalue=0; confidence=medium |
| GO | GO:0000287 (magnesium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0016887 (ATP hydrolysis activity); GO:0045332 (phospholipid translocation); GO:0140326 (ATPase-coupled intramembrane lipid carrier activity) |
| KEGG | - |
| Pfam | PF13246 (Cation_ATPase); PF16209 (PhoLip_ATPase_N); PF16212 (PhoLip_ATPase_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989373 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769317.1 |
| 2 | Endosome membrane | 内体膜 | 0.60000 | XP_057769317.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057769317.1 |
| 4 | Endosome | 内体 | 0.40000 | XP_057769317.1 |
| 5 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057769317.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:38209100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B28,B79,C18,D5 |
Chr6:38209109 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr6:38210150 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C29,C72,C79 |
Chr6:38210381 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr6:38210474 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr6:38210531 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B3,B70,C62 |
Chr6:38210583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr6:38210585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,B98 |
Chr6:38210984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C30,C55,C74 |
Chr6:38211113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr6:38211234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr6:38211254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B83,C2,C32,C59,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769317.1PF16209
PhoLip_ATPase_N 40-105 aa
PF13246
Cation_ATPase 516-712 aa
PF16212
PhoLip_ATPase_C 890-1140 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769317.1 |
Pfam | PF16209 |
PhoLip_ATPase_N | Family | 40 | 105 | 2.6e-23 | 82.2 | Phospholipid-translocating ATPase N-terminal |
XP_057769317.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 516 | 712 | 9.4e-19 | 68.6 | P-type ATPase, cytoplasmic domain N |
XP_057769317.1 |
Pfam | PF16212 |
PhoLip_ATPase_C | Family | 890 | 1140 | 2.3e-92 | 310.0 | Phospholipid-translocating P-type ATPase C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。