当前解析结果
SmilChr06G002646| 统一新 Gene ID | SmilChr06G002646 |
|---|---|
| 名称 | SmilChr06G002646 |
| 描述 | uncharacterized SmilChr06G002646 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 38238428 - 38239801 / - |
| NCBI Gene ID | LOC130989418 |
|---|---|
| GeneID | 130989418 |
| locus_tag | - |
| NCBI Name | LOC130989418 |
| 原始查询 | SmilChr06G002646 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NHL domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:814669]; symbol=AT2G01410; hit=AT2G01410; species=arabidopsis; confidence=high |
| 产物 | NHL domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:814669]; symbol=AT2G01410; hit=AT2G01410; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G01410 (AT2G01410)NHL domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:814669] identity=51.9; qcov=1.04; evalue=1.67e-119; confidence=high |
| Rice | Os01g0606133- identity=36; qcov=0.945; evalue=2.01e-35; confidence=medium |
| GO | GO:0005783 (endoplasmic reticulum) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989418 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.40000 | XP_057769402.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057769402.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057769402.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769402.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769402.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:38238596 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | D4 |
Chr6:38238596 |
CT |
C |
1bp_deletion | CDS_variant | 1 | D4 |
Chr6:38238599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr6:38238607 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | D4 |
Chr6:38238607 |
TC |
T |
1bp_deletion | CDS_variant | 1 | D4 |
Chr6:38238641 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | D4 |
Chr6:38238641 |
CA |
C |
1bp_deletion | CDS_variant | 1 | D4 |
Chr6:38238647 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | D4 |
Chr6:38238647 |
AT |
A |
1bp_deletion | CDS_variant | 1 | D4 |
Chr6:38238663 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | D4 |
Chr6:38238663 |
C |
CT |
1bp_insertion | CDS_variant | 1 | D4 |
Chr6:38238705 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,B98 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。