当前解析结果
SmilChr06G002651| 统一新 Gene ID | SmilChr06G002651 |
|---|---|
| 名称 | SmilChr06G002651 |
| 描述 | uncharacterized SmilChr06G002651 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 38330808 - 38332529 / + |
| NCBI Gene ID | LOC130990880 |
|---|---|
| GeneID | 130990880 |
| locus_tag | - |
| NCBI Name | LOC130990880 |
| 原始查询 | SmilChr06G002651 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=30.1; qcov=0.305; evalue=1.6e-22; confidence=low |
| Rice | Os12g0156200- identity=22.3; qcov=0.361; evalue=2.49e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990880 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771090.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057771090.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057771090.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057771090.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057771090.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:38330822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B71,C82 |
Chr6:38331039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,B118 |
Chr6:38331127 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B138,B41,B76,C3,C55 |
Chr6:38331183 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C83 |
Chr6:38331183 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C83 |
Chr6:38331184 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C56 |
Chr6:38331184 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr6:38331192 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B12 |
Chr6:38331192 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr6:38331236 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:38331270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C14 |
Chr6:38331329 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。