当前解析结果
SmilChr06G002676| 统一新 Gene ID | SmilChr06G002676 |
|---|---|
| 名称 | SmilChr06G002676 |
| 描述 | serine/threonine-protein kinase STY13-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 38667784 - 38676358 / + |
| NCBI Gene ID | LOC130989412 |
|---|---|
| GeneID | 130989412 |
| locus_tag | - |
| NCBI Name | LOC130989412 |
| 原始查询 | SmilChr06G002676 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase STY13-like |
| 产物 | serine/threonine-protein kinase STY13-like |
| Arabidopsis | AT3G01490 (AT3G01490)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821136] identity=74.3; qcov=1.08; evalue=0; confidence=high |
| Rice | Os05g0577700- identity=76.3; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like); PF17667 (Pkinase_fungal) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989412 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057769389.1 |
| 2 | Cell membrane | 细胞膜 | 1.00000 | XP_057769389.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057769389.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769389.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769389.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:38674103 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr6:38675260 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B17,C20 |
Chr6:38675285 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:38675310 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B105,B134,B84 |
Chr6:38675319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769389.1PF00069
Pkinase 74-344 aa
PF07714
PK_Tyr_Ser-Thr 74-344 aa
PF14531
Kinase-like 186-292 aa
PF17667
Pkinase_fungal 203-278 aa
XP_057769390.1PF00069
Pkinase 74-344 aa
PF07714
PK_Tyr_Ser-Thr 74-344 aa
PF14531
Kinase-like 186-292 aa
PF17667
Pkinase_fungal 203-278 aa
XP_057769391.1PF00069
Pkinase 74-344 aa
PF07714
PK_Tyr_Ser-Thr 74-344 aa
PF14531
Kinase-like 186-292 aa
PF17667
Pkinase_fungal 203-278 aa
XP_057769392.1PF00069
Pkinase 74-344 aa
PF07714
PK_Tyr_Ser-Thr 74-344 aa
PF14531
Kinase-like 186-292 aa
PF17667
Pkinase_fungal 203-278 aa
XP_057769394.1PF00069
Pkinase 74-344 aa
PF07714
PK_Tyr_Ser-Thr 74-344 aa
PF14531
Kinase-like 186-292 aa
PF17667
Pkinase_fungal 203-278 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769389.1 |
Pfam | PF00069 |
Pkinase | Domain | 74 | 344 | 2.3e-48 | 165.6 | Protein kinase domain |
XP_057769389.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 74 | 344 | 1.3e-60 | 205.6 | Protein tyrosine and serine/threonine kinase |
XP_057769389.1 |
Pfam | PF14531 |
Kinase-like | Family | 186 | 292 | 7e-07 | 29.5 | Kinase-like |
XP_057769389.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 203 | 278 | 2.9e-07 | 30.3 | Fungal protein kinase |
XP_057769390.1 |
Pfam | PF00069 |
Pkinase | Domain | 74 | 344 | 2.3e-48 | 165.6 | Protein kinase domain |
XP_057769390.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 74 | 344 | 1.3e-60 | 205.6 | Protein tyrosine and serine/threonine kinase |
XP_057769390.1 |
Pfam | PF14531 |
Kinase-like | Family | 186 | 292 | 7e-07 | 29.5 | Kinase-like |
XP_057769390.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 203 | 278 | 2.9e-07 | 30.3 | Fungal protein kinase |
XP_057769391.1 |
Pfam | PF00069 |
Pkinase | Domain | 74 | 344 | 2.3e-48 | 165.6 | Protein kinase domain |
XP_057769391.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 74 | 344 | 1.3e-60 | 205.6 | Protein tyrosine and serine/threonine kinase |
XP_057769391.1 |
Pfam | PF14531 |
Kinase-like | Family | 186 | 292 | 7e-07 | 29.5 | Kinase-like |
XP_057769391.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 203 | 278 | 2.9e-07 | 30.3 | Fungal protein kinase |
XP_057769392.1 |
Pfam | PF00069 |
Pkinase | Domain | 74 | 344 | 2.3e-48 | 165.6 | Protein kinase domain |
XP_057769392.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 74 | 344 | 1.3e-60 | 205.6 | Protein tyrosine and serine/threonine kinase |
XP_057769392.1 |
Pfam | PF14531 |
Kinase-like | Family | 186 | 292 | 7e-07 | 29.5 | Kinase-like |
XP_057769392.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 203 | 278 | 2.9e-07 | 30.3 | Fungal protein kinase |
XP_057769394.1 |
Pfam | PF00069 |
Pkinase | Domain | 74 | 344 | 2.3e-48 | 165.6 | Protein kinase domain |
XP_057769394.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 74 | 344 | 1.3e-60 | 205.6 | Protein tyrosine and serine/threonine kinase |
XP_057769394.1 |
Pfam | PF14531 |
Kinase-like | Family | 186 | 292 | 7e-07 | 29.5 | Kinase-like |
XP_057769394.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 203 | 278 | 2.9e-07 | 30.3 | Fungal protein kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。