当前解析结果
SmilChr06G002711| 统一新 Gene ID | SmilChr06G002711 |
|---|---|
| 名称 | SmilChr06G002711 |
| 描述 | WAT1-related protein At3g28050-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 39189633 - 39191011 / - |
| NCBI Gene ID | LOC130989448 |
|---|---|
| GeneID | 130989448 |
| locus_tag | - |
| NCBI Name | LOC130989448 |
| 原始查询 | SmilChr06G002711 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | WAT1-related protein At3g28050-like |
| 产物 | WAT1-related protein At3g28050-like |
| Arabidopsis | AT3G28050 (UMAMIT41)nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:822429] identity=49.1; qcov=1.08; evalue=3.69e-44; confidence=medium |
| Rice | Os02g0114100- identity=33.3; qcov=0.837; evalue=1.96e-22; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989448 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769443.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057769443.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057769443.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769443.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769443.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:39189765 |
A |
AT |
1bp_insertion | frameshift_variant | 9 | A3,B1,B69,B7,B90,B92,C15,C82,C83 |
Chr6:39189806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B52,C16,D4 |
Chr6:39189834 |
G |
GC |
1bp_insertion | frameshift_variant | 16 | B11,B114,B117,B134,B138,B41,B73,B76,B89,C25,C27,C30,C31,C56,C70,C9 |
Chr6:39189849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr6:39190681 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B74 |
Chr6:39190681 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr6:39190707 |
AC |
A |
1bp_deletion | frameshift_variant | 4 | B28,B32,B79,C87 |
Chr6:39190707 |
AC |
A |
1bp_deletion | CDS_variant | 4 | B28,B32,B79,C87 |
Chr6:39190711 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,C26 |
Chr6:39190718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr6:39190731 |
C |
T |
EMS_canonical_SNV | stop_gained | 10 | A23,B47,B85,B91,C24,C32,C5,C74,C84,D7 |
Chr6:39190755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B47,B62,C34,C5 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。