Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002714`

染色体: Chr06 坐标: 39217716-39225183 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002714`
名称	SmilChr06G002714
描述	DNA repair protein UVH3
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	39217716 - 39225183 / `-`

ID 对照

NCBI Gene ID	`LOC130989372`
GeneID	`130989372`
locus_tag	`-`
NCBI Name	`LOC130989372`
原始查询	`SmilChr06G002714`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA repair protein UVH3
产物	DNA repair protein UVH3
Arabidopsis	`AT3G28030` (UVH3) 5'-3' exonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:822427] identity=50.5; qcov=0.504; evalue=1.93e-169; confidence=medium
Rice	`Os03g0205400` - identity=44.2; qcov=0.835; evalue=0; confidence=medium
GO	GO:0003697 (single-stranded DNA binding); GO:0004520 (DNA endonuclease activity); GO:0005634 (nucleus); GO:0006289 (nucleotide-excision repair)
KEGG	smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage))
Pfam	PF00752 (XPG_N); PF00867 (XPG_I)
InterPro	-
eggNOG	-
NR	GeneID:130989372

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769314.1`
2	Chromosome	染色体	0.00000	`XP_057769314.1`
3	Centromere	着丝粒	0.00000	`XP_057769314.1`
4	Chromatin	染色质	0.00000	`XP_057769314.1`
5	Telomere	端粒	0.00000	`XP_057769314.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:39218085`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr6:39218117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr6:39218130`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr6:39218225`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr6:39218346`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr6:39218492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:39218515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,B10,C36
`Chr6:39218527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,C26,C52,D10,D11
`Chr6:39218682`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,C51,C74
`Chr6:39218745`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B47,C5
`Chr6:39218745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B47,C5
`Chr6:39218878`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769314.1

1517 aa

758

1517

XPG_N

XPG_I

PF00752 XPG_N 1-97 aa PF00867 XPG_I 923-1004 aa

XP_057769315.1

1309 aa

654

1309

XPG_I

PF00867 XPG_I 715-796 aa

XP_057769316.1

1309 aa

654

1309

XPG_I

PF00867 XPG_I 715-796 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769314.1`	Pfam	`PF00752`	XPG_N	Family	1	97	8.6e-30	103.9	XPG N-terminal domain
`XP_057769314.1`	Pfam	`PF00867`	XPG_I	Family	923	1004	3.1e-27	95.5	XPG I-region
`XP_057769315.1`	Pfam	`PF00867`	XPG_I	Family	715	796	2.7e-27	95.6	XPG I-region
`XP_057769316.1`	Pfam	`PF00867`	XPG_I	Family	715	796	2.7e-27	95.6	XPG I-region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057913331.1
AGTATTTGAGAAGAAGAAAATCCAATTAACGGTCAACCGTCCAACGCCTCGTTTCGATTCTGCACTCCTAGACCAGACCAGGGTTTCATATAAATATAGTATAGTCGCCAAGAAATGAAGAACAACAATGGCGGCAAATACTGAAACTGTCAATTTTGTGAATTAAAACCAACACAAGTAATTTAATGGGAGTCCACGGTCTCTGGGAACTCCTCGCCCCCGTCGGCCGCCGCGTCTCCGTAGAAACCCTTGCCGGGAAG...

XM_057913332.1
GATGTTAAAAAACAGAGGCAGGAGAATGATATCAAAGGGAAAAGGCCCGTTGAACTAGAACCTGGTGATGAGCCGGGAAAGAAGAAACATGGTGATGATGATGTGGCTGCAAGTTGCTCTCAAGAAGAGTTAGACGAGATTTGATTTAGGTTGGCAGCTTCTATTGCTGCAGAGGAGAATGAGGGTTTTGGTTTTGGTGCATCAACATCTGGTGCTCCAGATCATGGACTTCTTGATGAGGACGATGATGAAGATGAGGA...

CDS

3 records

下载 CDS FASTA

LOC130989372
ATGGGAGTCCACGGTCTCTGGGAACTCCTCGCCCCCGTCGGCCGCCGCGTCTCCGTAGAAACCCTTGCCGGGAAGAAGCTCGCGATCGACGCGAGCATATGGATGATACAGTTTATGAAGGCAATGCGGGACGAGAAAGGGGAAATGGTGCGGAACGCCCACATATTGGGGTTCTTCCGTCGAATTTGCAAGCTTCTCTATCTTCGAACTAAGCCGGTATTTGTGTTCGACGGCGGCACGCCTGCTCTCAAGCGGCGCAC...

LOC130989372
ATGATACTACCCGAGATGCATGGTAAAGTTGATCCTGCTGTTTTGGCTGCTTTGCCTCCATCGATGCAACTTGATCTTCTTGTTCAGATGAGAGAGAGACTCATGGCTGAGAATAGGCAGAAGTATCAGAAGGTCAAAAAGGCCCCAGCAAGGTTTTCGGAGCTACAAATAGAAGCTTATCTCAAAACAGTTGCTTTCCGCCGTGAGATAGATGGGGTCCAGAAGTCTGCTGCAGGGAGGGGCATAGGTGGTGTGCAGAC...

Protein

3 records

下载 Protein FASTA

XP_057769314.1
MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDEKGEMVRNAHILGFFRRICKLLYLRTKPVFVFDGGTPALKRRTVIARRRQRENAQVKIRKTAEKLLLNHLKTMRLQELAADVKKQRQENDIKGKRPVELEPGDEPGKKKHGDDDVAASCSQEELDEMLAASIAAEENEGFGFGASTSGAPDHGLLDEDDDEDEEMILPEMHGKVDPAVLAALPPSMQLDLLVQMRERLMAENRQKYQKVKKAPARF...

XP_057769315.1
MILPEMHGKVDPAVLAALPPSMQLDLLVQMRERLMAENRQKYQKVKKAPARFSELQIEAYLKTVAFRREIDGVQKSAAGRGIGGVQTSRIASEANREFIFSSSFTGDKEALTSVGQERNGADQSQPQPVVSSANAVNIDQRTKKSDVAAETTVAESEKAFHDEVETYLDERGRVRVSKVRALGIRMTRDLQRNLDLMKEMDQESTESNEKGNNESATTRNPGALDDSYHRNPQLEATDMNNGMNSEGDNIGEAGVLNGAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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