当前解析结果
SmilChr06G002718| 统一新 Gene ID | SmilChr06G002718 |
|---|---|
| 名称 | SmilChr06G002718 |
| 描述 | uncharacterized SmilChr06G002718 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 39258737 - 39260113 / + |
| NCBI Gene ID | LOC130990897 |
|---|---|
| GeneID | 130990897 |
| locus_tag | - |
| NCBI Name | LOC130990897 |
| 原始查询 | SmilChr06G002718 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0590366; species=rice; confidence=low |
| 产物 | hit=Os04g0590366; species=rice; confidence=low |
| Arabidopsis | AT5G27260 (AT5G27260)Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784] identity=24.6; qcov=0.917; evalue=1.09e-08; confidence=weak |
| Rice | Os04g0590366- identity=30.9; qcov=0.516; evalue=3.45e-22; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990897 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771108.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057771108.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057771108.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057771108.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057771108.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:39259111 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,C36 |
Chr6:39259138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr6:39259190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B13,B24,C36,D10 |
Chr6:39259198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr6:39259218 |
G |
A |
EMS_canonical_SNV | stop_gained | 37 | A1,A10,A19,A4,A7,B1,B121,B124,B127,B139,B14,B18,B19,B20,B21,B23,B25,B30,B4,B41,B51,B57,B67,B72,B74,B78,B85,B9,C1,C10,C11,C20,C35,C41,C65,C69,C87 |
Chr6:39259241 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B28,B86,C24 |
Chr6:39259273 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C52,C74 |
Chr6:39259334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,C36 |
Chr6:39259337 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C17 |
Chr6:39259337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr6:39259338 |
G |
GA |
1bp_insertion | frameshift_variant | 4 | A16,B7,C17,C30 |
Chr6:39259338 |
G |
GA |
1bp_insertion | CDS_variant | 4 | A16,B7,C17,C30 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。