Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002721`

染色体: Chr06 坐标: 39301377-39307397 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002721`
名称	SmilChr06G002721
描述	uncharacterized SmilChr06G002721
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	39301377 - 39307397 / `+`

ID 对照

NCBI Gene ID	`LOC130989377`
GeneID	`130989377`
locus_tag	`-`
NCBI Name	`LOC130989377`
原始查询	`SmilChr06G002721`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sulfatase and phosphatidylinositolglycan class N domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821231]; symbol=AT3G01380; hit=AT3G01380; species=arabidopsis; confidence=high
产物	sulfatase and phosphatidylinositolglycan class N domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821231]; symbol=AT3G01380; hit=AT3G01380; species=arabidopsis; confidence=high
Arabidopsis	`AT3G01380` (AT3G01380) sulfatase and phosphatidylinositolglycan class N domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821231] identity=65.5; qcov=0.979; evalue=0; confidence=high
Rice	`Os02g0581000` - identity=66.8; qcov=0.519; evalue=0; confidence=medium
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0006506 (GPI anchor biosynthetic process); GO:0051377 (mannose-ethanolamine phosphotransferase activity)
KEGG	smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00884 (Sulfatase); PF01663 (Phosphodiest); PF04987 (PigN)
InterPro	-
eggNOG	-
NR	GeneID:130989377

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057769322.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057769322.1`
3	Nucleus	细胞核	0.00000	`XP_057769322.1`
4	Chromosome	染色体	0.00000	`XP_057769322.1`
5	Centromere	着丝粒	0.00000	`XP_057769322.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:39301814`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B14,B98,C10,C35
`Chr6:39301833`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr6:39301845`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:39302447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C51,C74
`Chr6:39302536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,C37
`Chr6:39303126`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr6:39303238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B63,B83
`Chr6:39303403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr6:39303438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr6:39303936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:39303964`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B129,B63,B83
`Chr6:39303968`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B85,B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769322.1

988 aa

494

988

Phosphodiest

Sulfatase

PigN

PF01663 Phosphodiest 183-296 aa PF00884 Sulfatase 251-331 aa PF04987 PigN 467-940 aa

XP_057769323.1

823 aa

412

823

Phosphodiest

Sulfatase

PigN

PF01663 Phosphodiest 17-131 aa PF00884 Sulfatase 86-166 aa PF04987 PigN 302-775 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769322.1`	Pfam	`PF01663`	Phosphodiest	Family	183	296	4.1e-09	37.2	Type I phosphodiesterase / nucleotide pyrophosphatase
`XP_057769322.1`	Pfam	`PF00884`	Sulfatase	Family	251	331	4.8e-06	26.8	Sulfatase
`XP_057769322.1`	Pfam	`PF04987`	PigN	Family	467	940	3.3e-123	412.6	Phosphatidylinositolglycan class N (PIG-N)
`XP_057769323.1`	Pfam	`PF01663`	Phosphodiest	Family	17	131	2.2e-05	24.9	Type I phosphodiesterase / nucleotide pyrophosphatase
`XP_057769323.1`	Pfam	`PF00884`	Sulfatase	Family	86	166	4.9e-06	26.8	Sulfatase
`XP_057769323.1`	Pfam	`PF04987`	PigN	Family	302	775	2e-123	413.3	Phosphatidylinositolglycan class N (PIG-N)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913339.1
GGAAAAAAGGAAATAAAATGCTACTGAACAGCCACTGCATTCTCAAAAAAAAAAAATTACTAACAGCCACTGAAAGTTGCAACCTACGCTTAAGGAGTTGTACGTTTCGTTTGCATCGCAGCGGCAGCTCACCGGTTTCCGCCTCCGAATCCACTGACCCGAATACCCGAAGCTGATCCTTTTCTCGTTTCCGAACAATCCGCCTATTTTCTAGAATCAATTCACATCGAGCTACGCTGATATCGAAGATCTAGTTGCGA...

XM_057913340.1
GCTTGAGGGCGGACAAGTTTTTCGAGCCTGATTCAAATGGAAGCTACAGGGCGCCGTTCTTGAGGAGTGTGATCAAGGAGCGTGGCCGTTGGGGGGTGTCGCACGCGCGGCCTCCCACAGAATCTAGGCCCGGACATGTCTCTATCATTGCTGGTTTCTATGAAGATCCCAGTGCTGTTACTAAAGCATAGCACATGGAACTCTTATCCACATGAATATGAAGATTTTGCGACTGATGCATCATTTTTGGATGAATGGTC...

CDS

2 records

下载 CDS FASTA

LOC130989377
ATGAGGGGAGGAGATGGAATCCTCGGAGTGAGGAACAGCGTCAGATCACCCGAAGCAAACACTGTTAGAATCCGAACTCAGTTTCTGAGAAGACGAGAAAAATGGCTAGTGATTCTCGGAGTAGTACTCCACGCAGTCTACATGCTCAGCATTTTCGACATTTATTTCAAGACCCCAATCGTTCACGGCATGGAGCCCGTCACGCCACGGTTCCCGGCCCCTGCGAAACGCCTCGTGCTGCTTGTTGCGGATGGCTTGAG...

LOC130989377
ATGTCTCTATCATTGCTGGTTTCTATGAAGATCCCAGTGCTGTTACTAAAGCATAGCACATGGAACTCTTATCCACATGAATATGAAGATTTTGCGACTGATGCATCATTTTTGGATGAATGGTCACTGGATCAATTCGAGGGCCTCTTGAACAGGTCCAACGAAGATGTGAAATTGAAGCAGCTTCTTCAACAAGATAATCTTGTTGTATTCCTGCACCTGCTTGGTTGCGATTCAAATGGTCATGCTCATCGGCCTTA...

Protein

2 records

下载 Protein FASTA

XP_057769322.1
MRGGDGILGVRNSVRSPEANTVRIRTQFLRRREKWLVILGVVLHAVYMLSIFDIYFKTPIVHGMEPVTPRFPAPAKRLVLLVADGLRADKFFEPDSNGSYRAPFLRSVIKERGRWGVSHARPPTESRPGHVSIIAGFYEDPSAVTKGWKANPVEFDSVFNRSRHTFAFGSPDIIPIFCGALQHSTWNSYPHEYEDFATDASFLDEWSLDQFEGLLNRSNEDVKLKQLLQQDNLVVFLHLLGCDSNGHAHRPYSTIYLNNV...

XP_057769323.1
MSLSLLVSMKIPVLLLKHSTWNSYPHEYEDFATDASFLDEWSLDQFEGLLNRSNEDVKLKQLLQQDNLVVFLHLLGCDSNGHAHRPYSTIYLNNVRVVDQIAERVYNLVQNYFKDNLTAFVFTADHGMSDKGSHGDGHPSNTDTPLVAWGAGVRPPVRTFENHHHENTARFVDDHVHDMPTPVDWGLDDIERQDVNQADIAPLMSTLVGLPCPVNSVGNLPLGFVNLSKVDEVEAVLSNTKQILSQFLRKSQLKQSNLLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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