当前解析结果
SmilChr06G002723| 统一新 Gene ID | SmilChr06G002723 |
|---|---|
| 名称 | SmilChr06G002723 |
| 描述 | U-box domain-containing protein 40 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 39340379 - 39342379 / - |
| NCBI Gene ID | LOC130989397 |
|---|---|
| GeneID | 130989397 |
| locus_tag | - |
| NCBI Name | LOC130989397 |
| 原始查询 | SmilChr06G002723 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | U-box domain-containing protein 40 |
| 产物 | U-box domain-containing protein 40 |
| Arabidopsis | AT5G40140 (AT5G40140)RING/U-box superfamily protein with ARM repeat domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:834011] identity=52.7; qcov=1.07; evalue=1.82e-160; confidence=high |
| Rice | Os06g0238000 (OsPUB20)- identity=42.7; qcov=0.981; evalue=1.68e-98; confidence=medium |
| GO | GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF00514 (Arm); PF04564 (U-box); PF25598 (ARM_PUB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989397 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769361.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057769361.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057769361.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769361.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769361.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:39340731 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr6:39340963 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B120 |
Chr6:39340963 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B120 |
Chr6:39341013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr6:39341053 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,D1 |
Chr6:39341074 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr6:39341104 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:39341132 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B67 |
Chr6:39341132 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B67 |
Chr6:39341198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr6:39341244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr6:39341317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,B44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769361.1PF04564
U-box 26-96 aa
PF25598
ARM_PUB 180-385 aa
PF00514
Arm 250-287 aa
PF00514
Arm 290-328 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769361.1 |
Pfam | PF04564 |
U-box | Domain | 26 | 96 | 9.4e-12 | 45.6 | U-box domain |
XP_057769361.1 |
Pfam | PF25598 |
ARM_PUB | Repeat | 180 | 385 | 3.6e-10 | 40.5 | Plant U-box protein ARM repeat region |
XP_057769361.1 |
Pfam | PF00514 |
Arm | Repeat | 250 | 287 | 2.3e-22 | 78.9 | Armadillo/beta-catenin-like repeat |
XP_057769361.1 |
Pfam | PF00514 |
Arm | Repeat | 290 | 328 | 2.3e-22 | 78.9 | Armadillo/beta-catenin-like repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。