Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002774

染色体: Chr06 坐标: 40348053-40355981 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002774
名称SmilChr06G002774
描述ABC transporter B family member 15-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向40348053 - 40355981 / -

ID 对照

NCBI Gene IDLOC130989526
GeneID130989526
locus_tag-
NCBI NameLOC130989526
原始查询SmilChr06G002774

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ABC transporter B family member 15-like
产物ABC transporter B family member 15-like
ArabidopsisAT3G28345 (ABCB15)
ABC transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:822463]
identity=71.2; qcov=0.993; evalue=0; confidence=high
RiceOs02g0190300 (OsABCB9)
-
identity=69.5; qcov=0.977; evalue=0; confidence=high
GOGO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGGsmil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage))
PfamPF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro-
eggNOG-
NRGeneID:130989526

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057769484.1
2 Vacuole 液泡 0.20000 XP_057769484.1
3 Vacuole membrane 液泡膜 0.20000 XP_057769484.1
4 Nucleus 细胞核 0.00000 XP_057769484.1
5 Chromosome 染色体 0.00000 XP_057769484.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:40348365 G A EMS_canonical_SNV CDS_variant 5 C17,C34,C51,C62,C74
Chr6:40348392 C T EMS_canonical_SNV CDS_variant 5 C17,C34,C51,C62,C74
Chr6:40348503 C T EMS_canonical_SNV CDS_variant 4 A20,B124,C40,C65
Chr6:40348506 C T EMS_canonical_SNV CDS_variant 5 C17,C34,C51,C62,C74
Chr6:40348674 G A EMS_canonical_SNV CDS_variant 5 A20,B124,B51,C40,C65
Chr6:40348704 C T EMS_canonical_SNV CDS_variant 4 A20,B51,C40,C65
Chr6:40348988 GC G 1bp_deletion frameshift_variant 1 B94
Chr6:40348988 GC G 1bp_deletion CDS_variant 1 B94
Chr6:40348992 A AG 1bp_insertion frameshift_variant 1 B94
Chr6:40348992 A AG 1bp_insertion CDS_variant 1 B94
Chr6:40349045 C T EMS_canonical_SNV CDS_variant 3 A15,A23,C83
Chr6:40349512 G A EMS_canonical_SNV CDS_variant 1 B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057769484.1
1257 aa
N
1
628
1257
ABC_membrane
ABC_tran
ABC_membrane
ABC_tran
C
PF00664 ABC_membrane 43-312 aa PF00005 ABC_tran 388-536 aa PF00664 ABC_membrane 686-954 aa PF00005 ABC_tran 1026-1175 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769484.1 Pfam PF00664 ABC_membrane Family 43 312 6.6e-97 325.2 ABC transporter transmembrane region
XP_057769484.1 Pfam PF00005 ABC_tran Domain 388 536 3.4e-67 226.0 ABC transporter
XP_057769484.1 Pfam PF00664 ABC_membrane Family 686 954 6.6e-97 325.2 ABC transporter transmembrane region
XP_057769484.1 Pfam PF00005 ABC_tran Domain 1026 1175 3.4e-67 226.0 ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057913501.1
ACACAATCGCATTCATTGGCATCGCAAGGTTGAAGTACTTCATCTCTCTTAAACGACAAATTAAACTCTCTCTCTCTCTCTCTAACGAAGACACGTCGAGGGGAATCTGTGGGGCAAAAAAGGAGAAGCATGGTTAGTTCCGAAATGGGGCAGATGAAGAAAAACAACAGCAAAGGCAAAGGCAAAGGCATAGGCATAGGCATATCATTCAACTCCATCTTCATGCATGCCGATAAATACGACATGGCGTTGATGGCTAT...

CDS

1 records

下载 CDS FASTA
LOC130989526
ATGGTTAGTTCCGAAATGGGGCAGATGAAGAAAAACAACAGCAAAGGCAAAGGCAAAGGCATAGGCATAGGCATATCATTCAACTCCATCTTCATGCATGCCGATAAATACGACATGGCGTTGATGGCTATGGGTTTGGTCGGCTCAATCGGCGATGGAGTTTCCATGCCTGCCATGCTCTTAGTCACTAGCAAGCTCATGAACAGCTTCGGCGTCACTTCTTCCCAGCTTTCTCTCTCCCAAAACTTCACCCACTCCAT...

Protein

1 records

下载 Protein FASTA
XP_057769484.1
MVSSEMGQMKKNNSKGKGKGIGIGISFNSIFMHADKYDMALMAMGLVGSIGDGVSMPAMLLVTSKLMNSFGVTSSQLSLSQNFTHSINKNALVLCYMACVQWVACFLEGYCWTRTAERQASRLRSRYLKAVMRQDVGYFDLHVTSTAEVIQSVSSDSLVIQDSISEKVPVFVMNLSTFLGSYVAAFIMLWRLAIVGFPFIVLLVIPGLMYGRALMGIARKIRDEYAKANVIAEQALSSVRTVYAFVGESRTIAAYSAALQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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