Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002784`

染色体: Chr06 坐标: 40507891-40511178 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002784`
名称	SmilChr06G002784
描述	uncharacterized SmilChr06G002784
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	40507891 - 40511178 / `-`

ID 对照

NCBI Gene ID	`LOC130989532`
GeneID	`130989532`
locus_tag	`-`
NCBI Name	`LOC130989532`
原始查询	`SmilChr06G002784`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Source:NCBI gene (formerly Entrezgene);Acc:832138]; symbol=AT5G20160; hit=AT5G20160; species=arabidopsis; confidence=high
产物	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Source:NCBI gene (formerly Entrezgene);Acc:832138]; symbol=AT5G20160; hit=AT5G20160; species=arabidopsis; confidence=high
Arabidopsis	`AT5G20160` (AT5G20160) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Source:NCBI gene (formerly Entrezgene);Acc:832138] identity=75; qcov=1.25; evalue=3.61e-79; confidence=high
Rice	`Os03g0241200` - identity=93.8; qcov=1; evalue=1.19e-76; confidence=high
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0003723 (RNA binding); GO:0005730 (nucleolus); GO:0030490 (maturation of SSU-rRNA); GO:0031428 (box C/D methylation guide snoRNP complex); GO:0032040 (small-subunit processome); GO:0042254 (ribosome biogenesis); GO:0046540 (U4/U6 x U5 tri-snRNP complex); GO:0071011 (precatalytic spliceosome)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)); smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF01248 (Ribosomal_L7Ae)
InterPro	-
eggNOG	-
NR	GeneID:130989532

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057769488.1`
2	Cytoplasm	细胞质	1.00000	`XP_057769489.1`
3	Nucleoplasm	核质	0.20000	`XP_057769489.1`
4	Nucleus	细胞核	0.00000	`XP_057769488.1`
5	Chromosome	染色体	0.00000	`XP_057769488.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:40508217`	`G`	`GT`	1bp_insertion	frameshift_variant	148	A1,A10,A13,A14,A15,A16,A20,A21,A23,A24,A3,A8,B1,B102,B105,B108,B109,B11,B110,B113,B114,B12,B120,B123,B126,B128,B129,B130,B131,B132,B135,B136,B137,B138,B14,B140,B16,B17,B19,B2,B21,B25,B26,B28,B29,B3,B30,B31,B34,B36,B37,B4,B45,B46,B49,B5,B51,B52,B54,B55,B56,B57,B58,B59,B61,B63,B65,B66,B68,B69,B7,B70,B71,B73,B74,B77,B78,B79,B81,B83,B84,B86,B89,B90,B91,B92,B93,B95,B96,B97,C1,C10,C11,C12,C13,C16,C17,C20,C21,C23,C26,C27,C28,C30,C31,C32,C33,C34,C36,C37,C38,C4,C40,C41,C46,C49,C50,C54,C55,C56,C58,C59,C60,C62,C63,C64,C65,C66,C67,C68,C69,C70,C72,C73,C77,C78,C79,C8,C82,C83,C84,C87,C9,D1,D4,D6,D8,D9
`Chr6:40508224`	`TG`	`T`	1bp_deletion	frameshift_variant	2	C43,C6
`Chr6:40508224`	`TG`	`T`	1bp_deletion	CDS_variant	2	C43,C6
`Chr6:40508238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr6:40508299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B76,C10,C46
`Chr6:40508332`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C13,C8,C82
`Chr6:40508372`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B140,B68,B90,C11,C70
`Chr6:40508893`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B61,B68,C73,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769488.1

138 aa

138

Ribosomal_L7Ae

PF01248 Ribosomal_L7Ae 21-111 aa

XP_057769489.1

128 aa

128

Ribosomal_L7Ae

PF01248 Ribosomal_L7Ae 21-111 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769488.1`	Pfam	`PF01248`	Ribosomal_L7Ae	Domain	21	111	1.1e-27	96.2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
`XP_057769489.1`	Pfam	`PF01248`	Ribosomal_L7Ae	Domain	21	111	8.9e-28	96.5	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913506.1
GGAGTAAAATGGGGGCTATGAATAGAATCACTCATATTATTATTGTGTAAGAGACCATAAATATCAACAGCCCAAATTGAAAAACTATTGCAATGATATAAGAAGCCCAAATAATATAAAAGCTCAGATAGAGCAATTAAAATTGGATCGCAGCCCATTTTGCAGAGCCCATTTTAGCTTTAGGGTTTTGCCCTATTTTAGCATTCTTTTTCTGCGTCTGTGTAATTCTTGCCTCCCCTCCCCTCTTGTCTACCCCACCC...

XM_057913505.1
GAGTAAAATGGGGGCTATGAATAGAATCACTCATATTATTATTGTGTAAGAGACCATAAATATCAACAGCCCAAATTGAAAAACTATTGCAATGATATAAGAAGCCCAAATAATATAAAAGCTCAGATAGAGCAATTAAAATTGGATCGCAGCCCATTTTGCAGAGCCCATTTTAGCTTTAGGGTTTTGCCCTATTTTAGCATTCTTTTTCTGCGTCTGTGTAATTCTTGCCTCCCCTCCCCTCTTGTCTACCCCACCCC...

CDS

2 records

下载 CDS FASTA

LOC130989532
ATGACTGCAGAAGCTGTGAACCCGAAAGCATACCCGTTGGCGGATAGCCAGCTCACCATGACCATTCTCGATTTGGTTCAGCAAGCAGCAAATTACAAGCAGCTCAAAAAGGGTGCTAATGAAGCAACTAAGACTCTGAACAGAGGGATTTCTGAATTCGTTGTGATGGCTGCTGATACTGAGCCCCTTGAGATTCTTCTTCATCTTCCACTTCTTGCTGAAGACAAGAATGTGCCGTACGTGTTTGTTCCATCCAAGCA...

Protein

2 records

下载 Protein FASTA

XP_057769488.1
MTAEAVNPKAYPLADSQLTMTILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKSQIQQLKVIYDYFYTKKQPGLLNFF

XP_057769489.1
MTAEAVNPKAYPLADSQLTMTILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKSQIQQLKDAIEKLLI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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