Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002799`

染色体: Chr06 坐标: 40682142-40689564 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002799`
名称	SmilChr06G002799
描述	uncharacterized SmilChr06G002799
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	40682142 - 40689564 / `+`

ID 对照

NCBI Gene ID	`LOC130990918`
GeneID	`130990918`
locus_tag	`-`
NCBI Name	`LOC130990918`
原始查询	`SmilChr06G002799`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium
产物	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G19260` (AT1G19260) TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=44.3; qcov=0.972; evalue=0; confidence=medium
Rice	`Os02g0301400` - identity=41.6; qcov=0.574; evalue=5.06e-108; confidence=medium
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371)
InterPro	-
eggNOG	-
NR	GeneID:130990918

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057771129.1`
2	Cytoplasm	细胞质	0.20000	`XP_057771129.1`
3	Chromosome	染色体	0.00000	`XP_057771129.1`
4	Centromere	着丝粒	0.00000	`XP_057771129.1`
5	Chromatin	染色质	0.00000	`XP_057771129.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:40687071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B24,B46,C15,C77,C82
`Chr6:40687074`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B76,C47,C55
`Chr6:40687089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr6:40687109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B63,C15,C70
`Chr6:40687139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C15,C55
`Chr6:40687147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,B46
`Chr6:40687151`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr6:40687167`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr6:40687169`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	C22,C60,C82
`Chr6:40687169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C22,C60,C82
`Chr6:40687212`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B42,B43,B74,C25
`Chr6:40687231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771129.1

782 aa

391

782

DUF4371

Dimer_Tnp_hAT

PF14291 DUF4371 147-372 aa PF05699 Dimer_Tnp_hAT 683-736 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771129.1`	Pfam	`PF14291`	DUF4371	Domain	147	372	1.5e-90	303.7	ZMYM1/FAM200, RNase-like domain
`XP_057771129.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	683	736	1e-05	25.9	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915146.1
ATGGTGAAACACAAGCAGCAGCTGCGTGCTGTACTTGGCTGTGGTGCGAAGGAGGAGGTTGGAAATGGAAAACGTAGGAGTGAATCTTCATCTGCTTCAATTGCATCTATTCGTGGAGCAAATGTAGAAGTTGATGCCAATGTAGAAGTTGAAACAAATTTTGAAGAATACGTTCGTGATCCCGGATTAAGGCGACCAATTGAGGAATTTGATATTTCTATTCGAGATCAAATACGCAGAGAGTATTTGTCTATGGGTCC...

CDS

1 records

下载 CDS FASTA

LOC130990918
ATGGTGAAACACAAGCAGCAGCTGCGTGCTGTACTTGGCTGTGGTGCGAAGGAGGAGGTTGGAAATGGAAAACGTAGGAGTGAATCTTCATCTGCTTCAATTGCATCTATTCGTGGAGCAAATGTAGAAGTTGATGCCAATGTAGAAGTTGAAACAAATTTTGAAGAATACGTTCGTGATCCCGGATTAAGGCGACCAATTGAGGAATTTGATATTTCTATTCGAGATCAAATACGCAGAGAGTATTTGTCTATGGGTCC...

Protein

1 records

下载 Protein FASTA

XP_057771129.1
MVKHKQQLRAVLGCGAKEEVGNGKRRSESSSASIASIRGANVEVDANVEVETNFEEYVRDPGLRRPIEEFDISIRDQIRREYLSMGPCQLVGHNYPKTQFGNQLRSFQDVWYQKFVWLEYSVAKDACFCFWCYLFKPEDKSSRYKTDVFTKTGFTNWKKALIKFVEHVGDENSCHNNARIQVEAFKDQRHSVANMFRSNARELDVAYRTRLTASLDVTRFLLKQGLPFRGHDESTTSLNRGNFLELLQWYSDHNDVVSKV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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