Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002802`

染色体: Chr06 坐标: 40735628-40741086 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002802`
名称	SmilChr06G002802
描述	granule-bound starch synthase 2, chloroplastic/amyloplastic-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	40735628 - 40741086 / `+`

ID 对照

NCBI Gene ID	`LOC130989544`
GeneID	`130989544`
locus_tag	`-`
NCBI Name	`LOC130989544`
原始查询	`SmilChr06G002802`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	granule-bound starch synthase 2, chloroplastic/amyloplastic-like
产物	granule-bound starch synthase 2%2C chloroplastic/amyloplastic-like
Arabidopsis	`AT3G01180` (SS2) starch synthase 2 [Source:NCBI gene (formerly Entrezgene);Acc:820294] identity=65.6; qcov=0.904; evalue=0; confidence=high
Rice	`Os06g0229800` (ALK) - identity=77.1; qcov=0.62; evalue=0; confidence=high
GO	GO:0004373 (alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00534 (Glycos_transf_1); PF08323 (Glyco_transf_5); PF13692 (Glyco_trans_1_4)
InterPro	-
eggNOG	-
NR	GeneID:130989544

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057769503.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057769503.1`
3	Chloroplast stroma	叶绿体基质	0.40000	`XP_057769503.1`
4	Nucleus	细胞核	0.00000	`XP_057769503.1`
5	Chromosome	染色体	0.00000	`XP_057769503.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:40736141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B27,B38,B44,B51,C55
`Chr6:40736156`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr6:40737190`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr6:40737207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr6:40737425`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr6:40737427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr6:40739065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B93
`Chr6:40739081`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B103,B140,B73,B93
`Chr6:40739689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,B86,B88,C38
`Chr6:40740043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,B22,B30,C17
`Chr6:40740487`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr6:40740604`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769503.1

816 aa

408

816

Glyco_transf_5

Glycos_transf_1

Glyco_trans_1_4

PF08323 Glyco_transf_5 326-568 aa PF00534 Glycos_transf_1 625-747 aa PF13692 Glyco_trans_1_4 631-745 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769503.1`	Pfam	`PF08323`	Glyco_transf_5	Domain	326	568	1.4e-61	209.0	Starch synthase catalytic domain
`XP_057769503.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	625	747	2.7e-16	60.3	Glycosyl transferases group 1
`XP_057769503.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	631	745	1.3e-16	61.9	Glycosyl transferases group 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057913520.1
TAATTTATTTCCCACGTGTCATTAGCAAGAGGGGTTACTTGAGATGAGATGGTGAGCTCGAGATGAAGCAGAACCTCAAGCTTTCGGCTTCCAATATTAATTCGATGAAACCCACTGAATCTCAACCTCACATCGATTTTGCTGCTTCTGATTTTGACTCCCTCCTTGGGACCTACTTCGAACCAGCAATTGGAACGCCTATCTAATTCATCTTGGCGTTTTGTTCATCACAAGCACAAGCCCACGCACGTTTATAAACT...

CDS

1 records

下载 CDS FASTA

LOC130989544
ATGGCGTCCATGAAATCCTATTCCTTCCCCACAGGAGTGGACAGTTCCATACTCGTTCGCGGCGCGAATCGTCATCGGCCATTGATTTCTATACTAGCCTACAGGCAGAGGAAAGTTGGGGATTGTAATTCACCTGGGTTTTCGAGTAATTCGGCCGTGGATCTTCTTAGCAGAGTGTCACTGTGCAGTGGATGCGGCGGCAGACGGCGGAGGTGGGCCAACCAGGGTGTAAAGGCTGCGGCGGCTGGAGGCCGGGCAGA...

Protein

1 records

下载 Protein FASTA

XP_057769503.1
MASMKSYSFPTGVDSSILVRGANRHRPLISILAYRQRKVGDCNSPGFSSNSAVDLLSRVSLCSGCGGRRRRWANQGVKAAAAGGRADETDDEVEDSLQATIEKSKKVLAIQSDLLKQIAERKKLVSSIKNASIDPEGGGQLYKESNVTISSDEASAESEDASELGNDLPGKQLKASSSSLDPVAKTEERGKGLPVNGASFDASSAKQPNANSSWAVQSKKVPYLPWQSPAAPAPEPSSSNNFYNVSKYSTEVIASSTEMS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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