Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002812`

染色体: Chr06 坐标: 40819244-40821210 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002812`
名称	SmilChr06G002812
描述	transcription factor CSA-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	40819244 - 40821210 / `-`

ID 对照

NCBI Gene ID	`LOC130989556`
GeneID	`130989556`
locus_tag	`-`
NCBI Name	`LOC130989556`
原始查询	`SmilChr06G002812`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor CSA-like
产物	transcription factor CSA-like
Arabidopsis	`AT1G69560` (MYB105) myb domain protein 105 [Source:NCBI gene (formerly Entrezgene);Acc:843292] identity=42.5; qcov=0.932; evalue=9.78e-69; confidence=medium
Rice	`Os01g0274800` (CSA) - identity=78.6; qcov=0.399; evalue=1.96e-68; confidence=low
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:130989556

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769509.1`
2	Chromosome	染色体	0.00000	`XP_057769509.1`
3	Centromere	着丝粒	0.00000	`XP_057769509.1`
4	Chromatin	染色质	0.00000	`XP_057769509.1`
5	Telomere	端粒	0.00000	`XP_057769509.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:40819617`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,C21
`Chr6:40820555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B56,B96,C85
`Chr6:40820938`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B47,D11
`Chr6:40820989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr6:40821059`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C51,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769509.1

294 aa

147

294

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 98-144 aa PF13921 Myb_DNA-bind_6 101-161 aa PF00249 Myb_DNA-binding 150-193 aa PF13921 Myb_DNA-bind_6 153-202 aa

XP_057769510.1

293 aa

146

293

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 98-144 aa PF13921 Myb_DNA-bind_6 101-161 aa PF00249 Myb_DNA-binding 150-193 aa PF13921 Myb_DNA-bind_6 153-202 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769509.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	98	144	3.4e-35	120.6	Myb-like DNA-binding domain
`XP_057769509.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	101	161	5.7e-27	94.4	Myb-like DNA-binding domain
`XP_057769509.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	150	193	3.4e-35	120.6	Myb-like DNA-binding domain
`XP_057769509.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	153	202	5.7e-27	94.4	Myb-like DNA-binding domain
`XP_057769510.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	98	144	3.3e-35	120.7	Myb-like DNA-binding domain
`XP_057769510.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	101	161	5.6e-27	94.4	Myb-like DNA-binding domain
`XP_057769510.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	150	193	3.3e-35	120.7	Myb-like DNA-binding domain
`XP_057769510.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	153	202	5.6e-27	94.4	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913527.1
GCTTCTCTACTCACTAAACCATCTCTAGTTTTCTCTCAAATATAAACTACTGCACCATTTTTTTCCTTTCTATGCAAAAATTTTGCCCTTTTGTCTTTCTCGAATTCGCCGTCTTCCATGCAGCAGCAGCAGCACCACCACATAAGCCGGCGCCACCGGGAAAACGGCGGCGCCTCCCTCATAGATAGGCTGCTCAGCCCTATGTTTTCATTAGGGTTTTCCGCCAACCCTCCGGATCAGATAATTCTAGGGTTTCAGAG...

XM_057913526.1
GCTTCTCTACTCACTAAACCATCTCTAGTTTTCTCTCAAATATAAACTACTGCACCATTTTTTTCCTTTCTATGCAAAAATTTTGCCCTTTTGTCTTTCTCGAATTCGCCGTCTTCCATGCAGCAGCAGCAGCACCACCACATAAGCCGGCGCCACCGGGAAAACGGCGGCGCCTCCCTCATAGATAGGCTGCTCAGCCCTATGTTTTCATTAGGGTTTTCCGCCAACCCTCCGGATCAGATAATTCTAGGGTTTCAGAG...

CDS

2 records

下载 CDS FASTA

LOC130989556
ATGCAGCAGCAGCAGCACCACCACATAAGCCGGCGCCACCGGGAAAACGGCGGCGCCTCCCTCATAGATAGGCTGCTCAGCCCTATGTTTTCATTAGGGTTTTCCGCCAACCCTCCGGATCAGATAATTCTAGGGTTTCAGAGTAGTAACATCCACGACCGCGAAGAAGAGGAAGAGGAAGAGGAGGAGGAAGAAGAAGAAGAAGCAACCTACAAAAGCTTCAAGAAAAATGGAGAAAACCCTAATTCGAGCTGCAAAAA...

Protein

2 records

下载 Protein FASTA

XP_057769509.1
MQQQQHHHISRRHRENGGASLIDRLLSPMFSLGFSANPPDQIILGFQSSNIHDREEEEEEEEEEEEEEATYKSFKKNGENPNSSCKKRENRGTKFCARGHWKPSEDEKLKDLVSAYGPQNWNLIAERLEGRSGKSCRLRWYNQLDPKINKKAFTEDEEERLMEAHRIYGNKWALISRLFPGRTDNSVKNHWHVLMARRSREKSKSYMKMKWACSKPPPLDHTKIPNYYYASHSGYEHFINHAGNSHSPGSTSQRSFTAPI...

XP_057769510.1
MQQQQHHHISRRHRENGGASLIDRLLSPMFSLGFSANPPDQIILGFQSSNIHDREEEEEEEEEEEEEEATYKSFKKNGENPNSSCKKRENRGTKFCARGHWKPSEDEKLKDLVSAYGPQNWNLIAERLEGRSGKSCRLRWYNQLDPKINKKAFTEDEEERLMEAHRIYGNKWALISRLFPGRTDNSVKNHWHVLMARRSREKSKSYMKMKWACSKPPPLDHTKIPNYYYASHSGYEHFINHGNSHSPGSTSQRSFTAPIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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