Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002813`

染色体: Chr06 坐标: 40853513-40860110 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002813`
名称	SmilChr06G002813
描述	polypyrimidine tract-binding protein homolog 1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	40853513 - 40860110 / `-`

ID 对照

NCBI Gene ID	`LOC130989558`
GeneID	`130989558`
locus_tag	`-`
NCBI Name	`LOC130989558`
原始查询	`SmilChr06G002813`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	polypyrimidine tract-binding protein homolog 1
产物	polypyrimidine tract-binding protein homolog 1
Arabidopsis	`AT3G01150` (PTB1) polypyrimidine tract-binding protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:821129] identity=85; qcov=0.994; evalue=0; confidence=high
Rice	`Os08g0436000` - identity=82.8; qcov=0.994; evalue=0; confidence=high
GO	GO:0003729 (mRNA binding); GO:0005634 (nucleus); GO:0043484 (regulation of RNA splicing)
KEGG	-
Pfam	PF00076 (RRM_1); PF11835 (RRM_8); PF13893 (RRM_5)
InterPro	-
eggNOG	-
NR	GeneID:130989558

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769511.1`
2	Cytoplasm	细胞质	1.00000	`XP_057769511.1`
3	Nucleoplasm	核质	1.00000	`XP_057769512.1`
4	Cytosol	细胞质基质	0.80000	`XP_057769511.1`
5	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057769511.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:40853813`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr6:40854059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr6:40855850`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B17,B29,B37,C36
`Chr6:40859741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769511.1

454 aa

227

454

RRM_1

RRM_5

RRM_8

RRM_1

PF00076 RRM_1 21-69 aa PF13893 RRM_5 109-175 aa PF13893 RRM_5 230-326 aa PF11835 RRM_8 242-320 aa PF00076 RRM_1 249-308 aa

XP_057769512.1

315 aa

158

315

RRM_1

RRM_5

RRM_8

RRM_1

PF00076 RRM_1 21-69 aa PF13893 RRM_5 108-175 aa PF13893 RRM_5 230-309 aa PF11835 RRM_8 242-311 aa PF00076 RRM_1 249-308 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769511.1`	Pfam	`PF00076`	RRM_1	Domain	21	69	3.5e-18	65.9	RNA recognition motif
`XP_057769511.1`	Pfam	`PF13893`	RRM_5	Domain	109	175	1.8e-11	44.5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057769511.1`	Pfam	`PF13893`	RRM_5	Domain	230	326	1.8e-11	44.5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057769511.1`	Pfam	`PF11835`	RRM_8	Domain	242	320	1.1e-09	39.1	RRM-like domain
`XP_057769511.1`	Pfam	`PF00076`	RRM_1	Domain	249	308	3.5e-18	65.9	RNA recognition motif
`XP_057769512.1`	Pfam	`PF00076`	RRM_1	Domain	21	69	7e-19	68.2	RNA recognition motif
`XP_057769512.1`	Pfam	`PF13893`	RRM_5	Domain	108	175	5.5e-10	39.7	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057769512.1`	Pfam	`PF13893`	RRM_5	Domain	230	309	5.5e-10	39.7	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057769512.1`	Pfam	`PF11835`	RRM_8	Domain	242	311	3e-09	37.7	RRM-like domain
`XP_057769512.1`	Pfam	`PF00076`	RRM_1	Domain	249	308	7e-19	68.2	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913528.1
AGAAAGAAGAAGAAAAAGAAAAATAAAAAATATAAGGAAATAAATAAAATATAAAAAAGTGTAAAAATTACAGCAACTTGCGTTTAATAATCCCCAAACAAAATACATCCGGTCCAAAAACAGTAGACTCTTATTATTAACCACCAAAAACCGGCAATCTACAATCCCCAATCATCGAGAAACCCTAGAATTCCGATAAACCCCAATCGACGGTAGCTCAGCAACGATGTCTACGTCGGCGCAGCCTCAGTTCCGGTACA...

XM_057913529.1
TACAGCAACTTGCGTTTAATAATCCCCAAACAAAATACATCCGGTCCAAAAACAGTAGACTCTTATTATTAACCACCAAAAACCGGCAATCTACAATCCCCAATCATCGAGAAACCCTAGAATTCCGATAAACCCCAATCGACGGTAGCTCAGCAACGATGTCTACGTCGGCGCAGCCTCAGTTCCGGTACACGCAGACGCCGTCGAAGGTCCTCCACCTCCGGAATCTTCCATGGGAGTGCATCGAAGAGGAGCTCATC...

CDS

2 records

下载 CDS FASTA

LOC130989558
ATGTCTACGTCGGCGCAGCCTCAGTTCCGGTACACGCAGACGCCGTCGAAGGTCCTCCACCTCCGGAATCTTCCATGGGAGTGCATCGAAGAGGAGCTCATCGAGCTCTGCAAACCATTCGGCAAGATTGTCAACACCAAGTGCAACGTCGGGGCTAATCGAAACCAAGCCTTTGTCGAATTCTCTGACCTGAACCAGGCAATAAATATGGTTACATACTATGCATCGTCTTCAGAGCCTGCACAGATCCGTGGCAAGAC...

Protein

2 records

下载 Protein FASTA

XP_057769511.1
MSTSAQPQFRYTQTPSKVLHLRNLPWECIEEELIELCKPFGKIVNTKCNVGANRNQAFVEFSDLNQAINMVTYYASSSEPAQIRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYSDVQTASTARDSLDGRSIPRYLLPSHVNECYLRISYSAHTDLNIKFQSHRSRDYTNPHLPVNPTAMDGLLQPVVGPDGKKKEFESNVLLASIENMQYAVTVDV...

XP_057769512.1
MSTSAQPQFRYTQTPSKVLHLRNLPWECIEEELIELCKPFGKIVNTKCNVGANRNQAFVEFSDLNQAINMVTYYASSSEPAQIRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYSDVQTASTARDSLDGRSIPRYLLPSHVNECYLRISYSAHTDLNIKFQSHRSRDYTNPHLPVNPTAMDGLLQPVVGPDGKKKEFESNVLLASIENMQYAVTVDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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