当前解析结果
SmilChr06G002816| 统一新 Gene ID | SmilChr06G002816 |
|---|---|
| 名称 | SmilChr06G002816 |
| 描述 | uncharacterized SmilChr06G002816 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 40867208 - 40869335 / + |
| NCBI Gene ID | LOC130989561 |
|---|---|
| GeneID | 130989561 |
| locus_tag | - |
| NCBI Name | LOC130989561 |
| 原始查询 | SmilChr06G002816 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high |
| 产物 | hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G33406 (AT5G33406)hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333] identity=64.9; qcov=1.01; evalue=1.17e-151; confidence=high |
| Rice | Os09g0499600- identity=39.5; qcov=0.94; evalue=8.84e-69; confidence=medium |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989561 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769513.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057769513.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057769513.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057769513.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057769513.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:40867990 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B18,B53,B71 |
Chr6:40867995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr6:40867997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,A3,D4 |
Chr6:40868026 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B56,B78,B96,C82,C85 |
Chr6:40868027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr6:40868032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B33,C10,C53,C63 |
Chr6:40868074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr6:40868130 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B98,C48,C64,C66 |
Chr6:40868137 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr6:40868141 |
TA |
T |
1bp_deletion | frameshift_variant | 16 | B115,B117,B135,B15,B41,B47,B71,B75,B81,B91,B93,C3,C34,C51,C60,C74 |
Chr6:40868148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C37,D6,D7 |
Chr6:40868159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769513.1PF05699
Dimer_Tnp_hAT 175-239 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769513.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 175 | 239 | 1.9e-12 | 47.5 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。