当前解析结果
SmilChr06G002817| 统一新 Gene ID | SmilChr06G002817 |
|---|---|
| 名称 | SmilChr06G002817 |
| 描述 | KH domain-containing protein HEN4 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 40872663 - 40881508 / + |
| NCBI Gene ID | LOC130989562 |
|---|---|
| GeneID | 130989562 |
| locus_tag | - |
| NCBI Name | LOC130989562 |
| 原始查询 | SmilChr06G002817 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | KH domain-containing protein HEN4 |
| 产物 | KH domain-containing protein HEN4 |
| Arabidopsis | AT5G15270 (AT5G15270)RNA-binding KH domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831379] identity=63.5; qcov=0.969; evalue=0; confidence=high |
| Rice | Os03g0376800- identity=62.7; qcov=0.933; evalue=0; confidence=high |
| GO | GO:0003729 (mRNA binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0010468 (regulation of gene expression) |
| KEGG | - |
| Pfam | PF00013 (KH_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989562 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769514.1 |
| 2 | Nucleoplasm | 核质 | 0.20000 | XP_057769516.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769514.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769514.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769514.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:40873698 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr6:40873719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,B101 |
Chr6:40873733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr6:40873788 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B23,B58,C36,C41,C82 |
Chr6:40873790 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | C39 |
Chr6:40873790 |
C |
CT |
1bp_insertion | CDS_variant | 1 | C39 |
Chr6:40873815 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr6:40874072 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,A11,A3 |
Chr6:40874074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr6:40874075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
Chr6:40874096 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:40874163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769514.1PF00013
KH_1 45-97 aa
PF00013
KH_1 140-208 aa
PF00013
KH_1 284-333 aa
PF00013
KH_1 369-435 aa
XP_057769516.1PF00013
KH_1 45-97 aa
PF00013
KH_1 140-208 aa
PF00013
KH_1 284-333 aa
PF00013
KH_1 369-435 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769514.1 |
Pfam | PF00013 |
KH_1 | Domain | 45 | 97 | 2.9e-57 | 191.0 | KH domain |
XP_057769514.1 |
Pfam | PF00013 |
KH_1 | Domain | 140 | 208 | 2.9e-57 | 191.0 | KH domain |
XP_057769514.1 |
Pfam | PF00013 |
KH_1 | Domain | 284 | 333 | 2.9e-57 | 191.0 | KH domain |
XP_057769514.1 |
Pfam | PF00013 |
KH_1 | Domain | 369 | 435 | 2.9e-57 | 191.0 | KH domain |
XP_057769516.1 |
Pfam | PF00013 |
KH_1 | Domain | 45 | 97 | 2.1e-57 | 191.4 | KH domain |
XP_057769516.1 |
Pfam | PF00013 |
KH_1 | Domain | 140 | 208 | 2.1e-57 | 191.4 | KH domain |
XP_057769516.1 |
Pfam | PF00013 |
KH_1 | Domain | 284 | 333 | 2.1e-57 | 191.4 | KH domain |
XP_057769516.1 |
Pfam | PF00013 |
KH_1 | Domain | 369 | 435 | 2.1e-57 | 191.4 | KH domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
7 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。