Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002822`

染色体: Chr06 坐标: 40975499-40980736 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002822`
名称	SmilChr06G002822
描述	uncharacterized SmilChr06G002822
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	40975499 - 40980736 / `+`

ID 对照

NCBI Gene ID	`LOC130989567`
GeneID	`130989567`
locus_tag	`-`
NCBI Name	`LOC130989567`
原始查询	`SmilChr06G002822`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824102]; symbol=AT3G49400; hit=AT3G49400; species=arabidopsis; confidence=medium
产物	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824102]; symbol=AT3G49400; hit=AT3G49400; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G49400` (AT3G49400) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824102] identity=36.4; qcov=0.978; evalue=4.86e-63; confidence=medium
Rice	`Os01g0702400` (OsWD40-22) - identity=40.9; qcov=0.403; evalue=3.86e-29; confidence=low
GO	GO:0000127 (transcription factor TFIIIC complex); GO:0004402 (histone acetyltransferase activity); GO:0005515 (protein binding); GO:0006384 (transcription initiation at RNA polymerase III promoter)
KEGG	-
Pfam	PF12657 (TFIIIC_delta)
InterPro	-
eggNOG	-
NR	GeneID:130989567

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769521.1`
2	Cytoplasm	细胞质	0.20000	`XP_057769521.1`
3	Chromosome	染色体	0.00000	`XP_057769522.1`
4	Centromere	着丝粒	0.00000	`XP_057769522.1`
5	Chromatin	染色质	0.00000	`XP_057769522.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:40976093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C51,C74
`Chr6:40976148`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr6:40976810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B40
`Chr6:40976811`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C36,C53
`Chr6:40976812`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr6:40976816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr6:40977247`	`A`	`AT`	1bp_insertion	stop_gained,frameshift_variant	73	A16,A4,B103,B104,B106,B107,B111,B112,B114,B117,B118,B12,B121,B123,B130,B135,B137,B140,B15,B21,B25,B28,B30,B31,B40,B41,B44,B45,B52,B53,B54,B56,B6,B63,B64,B69,B70,B73,B74,B75,B83,B85,B89,B9,B96,C10,C19,C24,C26,C29,C31,C34,C35,C5,C50,C56,C57,C6,C60,C62,C64,C67,C74,C75,C77,C79,C80,C85,C87,D4,D5,D8,D9
`Chr6:40977284`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B52,C10
`Chr6:40977504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,B32,B41,B44
`Chr6:40977508`	`GA`	`G`	1bp_deletion	frameshift_variant	3	B75,B84,C17
`Chr6:40977508`	`GA`	`G`	1bp_deletion	CDS_variant	3	B75,B84,C17
`Chr6:40977516`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769521.1

459 aa

230

459

TFIIIC_delta

PF12657 TFIIIC_delta 90-146 aa PF12657 TFIIIC_delta 240-359 aa

XP_057769522.1

450 aa

225

450

TFIIIC_delta

PF12657 TFIIIC_delta 231-350 aa

XP_057769523.1

416 aa

208

416

TFIIIC_delta

PF12657 TFIIIC_delta 90-146 aa PF12657 TFIIIC_delta 240-360 aa

XP_057769524.1

407 aa

204

407

TFIIIC_delta

PF12657 TFIIIC_delta 231-351 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769521.1`	Pfam	`PF12657`	TFIIIC_delta	Repeat	90	146	5.8e-19	69.3	Transcription factor IIIC subunit delta bet-propeller domain
`XP_057769521.1`	Pfam	`PF12657`	TFIIIC_delta	Repeat	240	359	5.8e-19	69.3	Transcription factor IIIC subunit delta bet-propeller domain
`XP_057769522.1`	Pfam	`PF12657`	TFIIIC_delta	Repeat	231	350	1.4e-08	35.1	Transcription factor IIIC subunit delta bet-propeller domain
`XP_057769523.1`	Pfam	`PF12657`	TFIIIC_delta	Repeat	90	146	2.1e-19	70.8	Transcription factor IIIC subunit delta bet-propeller domain
`XP_057769523.1`	Pfam	`PF12657`	TFIIIC_delta	Repeat	240	360	2.1e-19	70.8	Transcription factor IIIC subunit delta bet-propeller domain
`XP_057769524.1`	Pfam	`PF12657`	TFIIIC_delta	Repeat	231	351	5.4e-09	36.5	Transcription factor IIIC subunit delta bet-propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XR_009090689.1
AATCGGCCCGGCCCATCACGTTTAAAGCTCATCGAATGAGAAGACGACCAGAAAACTGACGAACTCGAAGTCGCTGACTCGCCGAGCTACTATCAAAGACAGCGCGCGTAGAAGCCTAATTCACCAACCCAACTAAATTCTGAGCCCTAATTCTTCCTGTTGCAGACCACTCGCACAGATCGAAACCGCACCGCAGCAAAGAGAAGGTGATAAGTATTCCTTTTTTTTTTGCCGCCATCGCGAATCTGTTATTGTTCAAT...

XR_009090690.1
AATCGGCCCGGCCCATCACGTTTAAAGCTCATCGAATGAGAAGACGACCAGAAAACTGACGAACTCGAAGTCGCTGACTCGCCGAGCTACTATCAAAGACAGCGCGCGTAGAAGCCTAATTCACCAACCCAACTAAATTCTGAGCCCTAATTCTTCCTGTTGCAGACCACTCGCACAGATCGAAACCGCACCGCAGCAAAGAGAAGGTGATAAGTATTCCTTTTTTTTTTGCCGCCATCGCGAATCTGTTATTGTTCAAT...

CDS

4 records

下载 CDS FASTA

LOC130989567
ATGGCCTGCTTCCAATCTGCCGTCTTCACATTGCGGACTATTTACCCCAACGCCGTCATCTGGTCCGAAGAAAATTTGGTGGTGGTGGCGTGCGGCACTGCTGTTATAATTTTGAATCCTCATAATCCTAAAGTTCGAGGTGTGATTGTCGTTCCATCAAGCAAGCGCTTTCCCACTGGGAAGATTAATGATGATGGCAGAGGTGCGGATTTGCTAAATGGGTGTTTGCTTCCTTATCATTTATTGCGGGAAACTCGTCC...

Protein

4 records

下载 Protein FASTA

XP_057769521.1
MACFQSAVFTLRTIYPNAVIWSEENLVVVACGTAVIILNPHNPKVRGVIVVPSSKRFPTGKINDDGRGADLLNGCLLPYHLLRETRPCTRSISWSPAGLASNAGCLLVVCTTSGHVKVYRRPHCYLEWVEVVNISEVLYNYYKNTNFGECQIVPSEGSDVIPRQDTADHKCTYGTFFRKSHKHRRQKAADIVTEDHGNLGENNTWQIVPVSFYEGKPSEEVTEECLPLISAQQYASRNEMLMSLIVAWSPILETSGNDVG...

XP_057769522.1
MACFQSAVFTLRTIYPNAVIWSEENLVVVACGTAVIILNPHNPKVRGVIVVPSSKRFPTGKINDDGRGADLLNGCLLPYHLLRETRPCTRSISWSPAGLASNAGGHVKVYRRPHCYLEWVEVVNISEVLYNYYKNTNFGECQIVPSEGSDVIPRQDTADHKCTYGTFFRKSHKHRRQKAADIVTEDHGNLGENNTWQIVPVSFYEGKPSEEVTEECLPLISAQQYASRNEMLMSLIVAWSPILETSGNDVGLPSSSSNCC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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