当前解析结果
SmilChr06G002844| 统一新 Gene ID | SmilChr06G002844 |
|---|---|
| 名称 | SmilChr06G002844 |
| 描述 | phosphate transporter PHO1 homolog 9 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 41196799 - 41200927 / - |
| NCBI Gene ID | LOC130989589 |
|---|---|
| GeneID | 130989589 |
| locus_tag | - |
| NCBI Name | LOC130989589 |
| 原始查询 | SmilChr06G002844 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphate transporter PHO1 homolog 9 |
| 产物 | phosphate transporter PHO1 homolog 9 |
| Arabidopsis | AT3G29060 (AT3G29060)EXS (ERD1/XPR1/SYG1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:822550] identity=52; qcov=1.06; evalue=0; confidence=high |
| Rice | Os01g0110100 (Pho1)- identity=33.8; qcov=1.06; evalue=2.12e-148; confidence=low |
| GO | GO:0000822 (inositol hexakisphosphate binding); GO:0005737 (cytoplasm); GO:0005794 (Golgi apparatus); GO:0005802 (trans-Golgi network); GO:0005886 (plasma membrane); GO:0006817 (phosphate ion transport); GO:0015114 (GO:0015114); GO:0016036 (cellular response to phosphate starvation) |
| KEGG | - |
| Pfam | PF03105 (SPX); PF03124 (EXS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989589 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769552.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057769552.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057769552.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769552.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769552.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:41197270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B12,C37 |
Chr6:41197294 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,B21,C55 |
Chr6:41197748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr6:41198151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C49,C50 |
Chr6:41198321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr6:41198467 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr6:41198512 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,B21,C55 |
Chr6:41198661 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr6:41198817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr6:41199281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B42,B43 |
Chr6:41199689 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B134,C25,C30,C56 |
Chr6:41200175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769552.1PF03105
SPX 1-315 aa
PF03124
EXS 404-747 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769552.1 |
Pfam | PF03105 |
SPX | Domain | 1 | 315 | 5.6e-73 | 247.6 | SPX domain |
XP_057769552.1 |
Pfam | PF03124 |
EXS | Family | 404 | 747 | 8.7e-94 | 315.2 | EXS family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。